Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09920 ATGGCTTGGACTAGAGGTAGAATCATCGGCCGGGGCTCAACTGCCACCGTCTATATTGCCCAACATCGTAATTCGGATCAAGTGTTTGCGGTGAAATCTACGGAGCTTCACAGCTCGGAGTTTCTGAAGAAAGAACAAGAGATTCTTTCCAAGGTTAAGTGTCCACAAATTGTGGACTACCGAGGTTGTGATGTCACGTTTGAAAACGGGGTTCATTTGTTTAATTTGTTCATGGAGTATGCCTCTAAGGGAACACTTGCTGATGCGGTTCGGAATGGAAATGGAAATGGAATGGAAGAAGGTTTGGTGGGATTCTACACGCGCCAGATTCTACTTGGACTTAATTACCTTCATTCGAATGGTATAGTGCATTGTGACTTGAAGGGACAGAATGTGTTGATGGTGGAACAAGGTGTGAAGATTGCTGATTTTGGTTGTGCTCGAAGGGTGGAGGAGGAGTTGGTGATTTCTGGTTCCCCGGCTTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAACAGGGGTTTGCTGCTGATGTATGGGCTTTGGGATGTACTGTGTTGGAGATGATCACAGGGAAAATGCCGTGGCAGGGAGTTTCTGACCCTGCCGCGGTTTTGTATCGGGTTGGATTCTCGGGTGATGTGCCGGAGATTCCTAATTTTGTGTCGGAACAGGGGAGGGATTTTTTGAGGAAGTGTTTGAAAAGAGATCCAAATGAGAGATGGTCGGTGGTTGAGCTTCTCGGACATGAGTTTGTTGGGAAGTTTAAGGAAAGTGTGTCTGATTCGGAAACACCGACGACTGTGCTGGAAGGAGGTTTTTGGGATTGGGACTCTTTGGAAACAACTCAGGAGGTGGGTTCCTCATTTGATTGTTATTCCTCGGATTCTTCGAGTCCTTCTTCCAGTACGGGAGACAGAATTCTAGGATTGTGTTCCAATGAGACCGTTTGGGAATTTGATGATGATGATGATGAATGGATCACGGTGAGAAGCAATGGAGAGGATTTGGATGCACCGTCTTTTGGAAAAACGGAAGAGTATGAATCAGACATTGTTCTTGAATTTCGTGATCATGAGATTGGTTTGAGTTTGATAGATTTTTATGAACCAAAATTTGTACTTGAATTGAGTACATGGAATGTCATTTTTTATTATTGGTGTTTTAGAAGCTGCAATTGTGGCTGTTTTGATAGTGATTTTTTATCAGTTTGTCAATGTAGAAAGATTGTTCTCTATGTAATAATTGATTCTCAGAAGAACAAAGAAAATTTTATCATCCCCTGCTTTCTACTTTTTGCTTTCTCTTTAACTTCTCATTGGATAGATAAACTCAACATTTTACAATATAATGAGATAATTTATGTGCCTCTTTAG 1377 0.4277 MAWTRGRIIGRGSTATVYIAQHRNSDQVFAVKSTELHSSEFLKKEQEILSKVKCPQIVDYRGCDVTFENGVHLFNLFMEYASKGTLADAVRNGNGNGMEEGLVGFYTRQILLGLNYLHSNGIVHCDLKGQNVLMVEQGVKIADFGCARRVEEELVISGSPAFMAPEVARGEEQGFAADVWALGCTVLEMITGKMPWQGVSDPAAVLYRVGFSGDVPEIPNFVSEQGRDFLRKCLKRDPNERWSVVELLGHEFVGKFKESVSDSETPTTVLEGGFWDWDSLETTQEVGSSFDCYSSDSSSPSSSTGDRILGLCSNETVWEFDDDDDEWITVRSNGEDLDAPSFGKTEEYESDIVLEFRDHEIGLSLIDFYEPKFVLELSTWNVIFYYWCFRSCNCGCFDSDFLSVCQCRKIVLYVIIDSQKNKENFIIPCFLLFAFSLTSHWIDKLNILQYNEIIYVPL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09920 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vifa1g09920 458 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09920 458 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vifa1g09920 458 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09920 458 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09920 458 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Vifa1g09920 458 Gene3D Transferase(Phosphotransferase) domain 1 2 285 - -
Vifa1g09920 458 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 336 - -
Vifa1g09920 458 CDD STKc_MAPKKK 3 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09920 Vifa-Chr1 1621788000 1621789376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09920 3 402 MAP Kinase Kinase Kinase AT5G55090 44.391 4.21e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa1g09920 Pkinase 1.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09920 K20716 - gmx:100802174 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02104 1 335802694 335803866 Vifa1g09920 1 1621788000 1621789376 ECH
Vifa1g09920 1 1621788000 1621789376 Vifa1g09920 1 1621788000 1621789376 ECH
Vifa1g09920 1 1621788000 1621789376 Vifa4g05069 4 1587769113 1587770344 ECH