Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09917 ATGGACAAAGGCTTCCCTGTAAACCTCACCCGCAACACCAACGCTGATGACGGCGGTGATCGGAAAATAACCAGCGAAGTCGATTTCTTCTCCGAAAGAAACAAACCATCACCTTCAGCTTCACACAACAACATCAAAAAGGAGATCATTTCAACCGACGTAAAACCTTCCACTTCCAATATTCATGTTAATACCGGTTTACAACTTGCCAACACCGCCAGTGATCAATCTGTAGTGGATGACGGAGTTTCATCTGATGCCAAGACCACTGAGCTTGCACACTTGCAAGTGGAGCTTCAACGGATGAATTCCGAGAACATAAAGCTGAAAGAGATGCTCAGTCATGTTACCGGTAACTACACCGCTTTGCAGATGCAGCTCATGTCATTAATGCAAAAGAATCACCACACAGAAAATGAGGTTGTCAATGCAAAAGCTGAGGAGAAAATCCATGGTGTTGATGGAGGAATAGTACCGAGGCAGTTTCTTGAGATAGGGACTAATGGAACAGCTGAAGTTGATGATAGAGTATCAAATTCTTCATCGGATGAAAGAACAAGATCGAACACGCCTCAGAATAGTCTTATTGAAGCTGGAGCTAGAGATCATATAAGAAATAACAACGGTAAAAATGGTAGAGAAGATAGTCCTGATTCAGAATCACAAGGTTGGGGTCCTAATAAGGTTCAGAAAATACTGAACTCTTCCAATGTTGCTGAGCAATCTGCTACGGAGGCTACAATGAGAAAAGCTCGCGTCTCCGTTCGCGCTAGATCAGAAGCTTCAATGATTAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAAAACAATATTGGTAACAACATACGAAGGAACACACAACCATCCACTTCCACCAGCAGCTATGGCAATGGCATCAACAACCTCAGCAGCAGCAAGCATGTTGCTATCGGGTTCAATGTCAAGCGCAGATGGAATAATGACACCAAATTTACTAGCAAGAGCTATTCTTCCTTGTTCAACAAGCATGGCAACACTTTCAGCATCAGCACCATTCCCAACTGTTACATTGGATCTAACACAAAACTCAAACCCAATCCCAAATCCAAATCCATTGCAGCAATTTCAAAGACCTCATCATGCGCCATTTCAAGTGCCTGGTTTCTTTCAAGGACAACCTCAGCATTTTCAACAAGCAGCCGCATCTCTTTATAATCAATCCAAATTCTCTGGTCTTCAATTGTCTCAAGAAGTTGGTTCTTCTCATTTAACAACCACACAAGCTCCAACACACCAACAACAGCAGCAACAACAACCTTCCTTAGCTGATTCCGTCAGCGCCGCCACTGCCGCTATCACTTCCGATCCAAACTTCACCGCTGTTCTTGCCGCCGCTATCTCCTCCATCATTGGCGGTGGTCACGGAAACAACAACAGCAACAACAACAATAACAATAGCAGAAGTGCAGTTAGCAACTTTTCAGGAAACTAA 1572 0.437 MDKGFPVNLTRNTNADDGGDRKITSEVDFFSERNKPSPSASHNNIKKEIISTDVKPSTSNIHVNTGLQLANTASDQSVVDDGVSSDAKTTELAHLQVELQRMNSENIKLKEMLSHVTGNYTALQMQLMSLMQKNHHTENEVVNAKAEEKIHGVDGGIVPRQFLEIGTNGTAEVDDRVSNSSSDERTRSNTPQNSLIEAGARDHIRNNNGKNGREDSPDSESQGWGPNKVQKILNSSNVAEQSATEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPIPNPNPLQQFQRPHHAPFQVPGFFQGQPQHFQQAAASLYNQSKFSGLQLSQEVGSSHLTTTQAPTHQQQQQQQPSLADSVSAATAAITSDPNFTAVLAAAISSIIGGGHGNNNSNNNNNNSRSAVSNFSGN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09917 523 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09917 523 SUPERFAMILY WRKY DNA-binding domain 257 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09917 523 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g09917 523 FunFam probable WRKY transcription factor 31 249 326 - -
Vifa1g09917 523 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 65 510 IPR044810 GO:0003700
Vifa1g09917 523 MobiDBLite consensus disorder prediction 169 227 - -
Vifa1g09917 523 Gene3D WRKY domain 249 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09917 523 Coils Coil 127 147 - -
Vifa1g09917 523 Pfam WRKY DNA -binding domain 266 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09917 523 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09917 523 MobiDBLite consensus disorder prediction 203 217 - -
Vifa1g09917 523 MobiDBLite consensus disorder prediction 500 523 - -
Vifa1g09917 523 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09917 Vifa-Chr1 1620734217 1620736433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09917 5 511 WRKY Transcription Factor Family AT1G62300 50.372 3.35e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g09917 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09917 - - gmx:100802124 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09917 1 1620734217 1620736433 Vifa1g09917 1 1620734217 1620736433 ECH
Vifa1g02106 1 336274805 336277533 Vifa1g09917 1 1620734217 1620736433 ECH