Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09902 ATGTCCAAAGGAGCCATTGCTGGCATAGTTGTTGGAGGAGCTTTTGGAATTTTACTTTTGGCACTCATTCTCTATGTTGTGTTCTATAGAAGAAAAAAAGTTGCTCAAGTAACCCTTCTACCAGTCCCAGGTGCATCTGAAGAACAATATAGCCAACTCCAACATGGTTGTGGAAGTAGCTTGGATAAGGCTTCCGAATCAACTACTATTGCTTCTCCGAGGTTGACTGGTATTACGGTTGATAAGTCAGTGGAGTTTTCATATGAGGAGTTAGCCAAAGCTACTGACGGCTTTAGCGCGGCAAATATAATAGGTCGAGGTGGATTTGGATCTGTTTACTATGCCGAGCTTCGCAACGAGAAAGCTGCAATAAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTAGCCGAACTAAAGGTTCTGACACACGTTCATCACTTGAATTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAATACATTGAGAATGGAAATCTAAGTCAACATTTGCGCGGCACAGGGAAGGATCCATTATCATGGGCAGCTAGAGTTCAAATTGCATTAGACTCAGCAAGAGGACTTGAATACATTCACGAGCATACAGTTCCTGTCTATATACATAGAGATGTTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGGAAAGGTTGCAGATTTTGGTTTGACAAAATTGACTGAATATGGTAGCTCCTCGTTACAAACACGCCTTGTCGGGACGTTTGGATATATGCCTCCTGAATATGCACAATATGGTGAAGTTTCTCCCAAAGTAGATGTATATGCTTTTGGAGTTGTTCTGTTTGAGCTTGTATCTGGGAAGCCGGCTATTGTGAAGACAAATGAAACTGAAAACGAGTCAAAGGGACTAGTTGCGCTGTTTGAAGAAGTTATTGTTCTTCCGGACCCAAAAGAAGATCTTGGTAAACTCGTTGATCCTAGGCTTGGAGAAAATTACCCTATTGACTCGGTATTTAAGATGTGTCGACTTGCGAAAGCTTGTACACATGAAAATCCTCAACTGAGGCCAAGCATGAGATCAATTGTAGTTGCTTTAATGACACTTTCATCTGCAGCTGAGGATTGGGATGTTGGATCATTCTATGAAAACCAAGCATTAGTGCATTTAATGTCTGGGAGGTAG 1191 0.4106 MSKGAIAGIVVGGAFGILLLALILYVVFYRRKKVAQVTLLPVPGASEEQYSQLQHGCGSSLDKASESTTIASPRLTGITVDKSVEFSYEELAKATDGFSAANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTGKDPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKVDVYAFGVVLFELVSGKPAIVKTNETENESKGLVALFEEVIVLPDPKEDLGKLVDPRLGENYPIDSVFKMCRLAKACTHENPQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09902 396 Gene3D Phosphorylase Kinase; domain 1 79 168 - -
Vifa1g09902 396 SMART serkin_6 98 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09902 396 Pfam Protein kinase domain 101 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09902 396 FunFam LysM receptor kinase 2 77 168 - -
Vifa1g09902 396 CDD STKc_IRAK 104 365 - -
Vifa1g09902 396 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
Vifa1g09902 396 CDD TM_EGFR-like 5 36 - -
Vifa1g09902 396 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 382 IPR044812 GO:0019199|GO:0045087
Vifa1g09902 396 SUPERFAMILY Protein kinase-like (PK-like) 76 368 IPR011009 -
Vifa1g09902 396 FunFam PTI1-like tyrosine-protein kinase 3 169 382 - -
Vifa1g09902 396 ProSiteProfiles Protein kinase domain profile. 98 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09902 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vifa1g09902 396 Gene3D Transferase(Phosphotransferase) domain 1 169 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09902 Vifa-Chr1 1618961982 1618964098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09902 4 396 Receptor kinase-like Gene Family AT3G21630 62.850 1.13e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g09902 Pkinase 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09902 - K13429 gmx:100802308 657.521