Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09898 ATGTCTTATACCCTTTTTGTCTTTCTAGCTTTCTTCTCTTTCATCCTTTCTTCTTCTCTTCCTCTTTCATTTGCCAATACTGACCCTTCTGATGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATAATCCAACTGAATTAACGGGTTGGAAAATTGGTGGCGGCGATCCATGTGGAGATTCATGGGAAGGGATTACTTGTGACGGTTCATCTGTTGATTCAATTGATCTCTCTGGTTTAGGACTCCATGGAACTCTTGGATATTTGCTTTCAGACCTTAAGTCACTGAAAAAGCTTGACTTGAGTGATAACAAGATCCATGATACAATTCCCTATCAGTTGCCACCAAATCTTACAAGCCTAAATCTAGCAGGAAATAACTTAACTGGAAATCTTCCTTATTCCTTTTCTGCCATGGTTTTACTCACTTATCTGAATATGAGCCATAACGCACTGTCCCTGCCTATCGGCGACTTTTTTGCTAATCATTCCCGTCTTGATACCGTGGATCTATCGTTCAATAACTTTTCCGGGGATCTTCCACCTTCATTTGAGTCACTGACAAATCTCTCTTCTCTTTTCTTGCAGAACAACCAATTGACCGGCTCTCTCACCGTTCTTGCTGGTTTGCCTTTAGATACTTTAAATGTTGCAAACAATAATTTCGGTGGGTGGATACCTCACGAGCTTAAATCTATCAATAATTTCATATATGATGGAAATTCCTTTGATGACGGCCCTGCACCTCCTTCGCCAGAATCAACTTCACCAGAATCTACTTCGCCCTCACCTAATGAACCTCATAAAAGTAATCATCACTCTGGGTCTGGTTCACAAACTAAAACACATGGTTCTAATTCAGATGACCATAAAGGAGCATCAGTGGGAGCCATTGTAGGAATTGTTTTAGGCTCAGTGTTGGTGTGTTCTATTCTGCTAGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAAGGTCCAAGAACTTCTAATGGGAGCCTTCCTCCTGGAGTTGTTGACGTAACTCCTCAGATGCAGGAGCAGAGGGTGAAAAGTGCTTCTGTGTTTACAGATCTCAAACCTCGTCCTCCGTCAGAAATAGTGGCAACAAATAGCTTCAGTCAAGAATTTATTATCGGCGAAGGTTCTCTCGGTCGAGTTTACAGGGCTGAATTCCCAAATGGGAAGATAATGGCCGTTAAGAAGATTGACAACGCGGCACTGTCCTTACAAGAGGAAGATAATTTTCTCGAAGCTATTTCAAATATGTCTCGCCTGCGGCATCCAAACGTATGTTACACTGGCTGGATACTCAGTAAAGCTTTACCTTGGAATGCCCGTGTGCGCATAGCTCTTGGCACAGCCCGGGCCTTAGAGTACTTGCACGAAGTTTGCTTGCCTTCAGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTCGACGAAGAGCTCAATCCTCACCTTTCTGACTGTGGCTTAGCTGCTCTGACACCAAACACCGAGCGACAGGTATCATCAACTCATATGGTTGGTTCATTCGGTTATAGCGCTCCTGAATTTGCACTATCAGGAGTATACACCCCACTTGACAGTTCAAGACCTAGAGCTGAACAGGTCGCTTGTGAGGTGGGCTACACCGCAACTCCATGA 1665 0.43 MSYTLFVFLAFFSFILSSSLPLSFANTDPSDVQALEVMYNALNNPTELTGWKIGGGDPCGDSWEGITCDGSSVDSIDLSGLGLHGTLGYLLSDLKSLKKLDLSDNKIHDTIPYQLPPNLTSLNLAGNNLTGNLPYSFSAMVLLTYLNMSHNALSLPIGDFFANHSRLDTVDLSFNNFSGDLPPSFESLTNLSSLFLQNNQLTGSLTVLAGLPLDTLNVANNNFGGWIPHELKSINNFIYDGNSFDDGPAPPSPESTSPESTSPSPNEPHKSNHHSGSGSQTKTHGSNSDDHKGASVGAIVGIVLGSVLVCSILLVALVFCIRKLKGKEKGPRTSNGSLPPGVVDVTPQMQEQRVKSASVFTDLKPRPPSEIVATNSFSQEFIIGEGSLGRVYRAEFPNGKIMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVCYTGWILSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSSTHMVGSFGYSAPEFALSGVYTPLDSSRPRAEQVACEVGYTATP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09898 554 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 444 528 IPR046959 -
Vifa1g09898 554 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vifa1g09898 554 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Vifa1g09898 554 Gene3D Ribonuclease Inhibitor 28 270 IPR032675 -
Vifa1g09898 554 MobiDBLite consensus disorder prediction 259 284 - -
Vifa1g09898 554 Pfam Protein kinase domain 452 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09898 554 Gene3D Transferase(Phosphotransferase) domain 1 441 536 - -
Vifa1g09898 554 SUPERFAMILY L domain-like 28 234 - -
Vifa1g09898 554 MobiDBLite consensus disorder prediction 243 291 - -
Vifa1g09898 554 SUPERFAMILY Protein kinase-like (PK-like) 363 533 IPR011009 -
Vifa1g09898 554 Gene3D Phosphorylase Kinase; domain 1 345 440 - -
Vifa1g09898 554 ProSiteProfiles Leucine-rich repeat profile. 190 212 IPR001611 GO:0005515
Vifa1g09898 554 ProSiteProfiles Protein kinase domain profile. 377 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09898 554 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Vifa1g09898 554 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09898 Vifa-Chr1 1617974439 1617978104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09898 143 543 Strubbelig Receptor Gene Family AT4G22130 54.697 1.88e-155 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa1g09898 Pkinase 5.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09898 - - gmx:100803711 716.457