Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09896 ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATGTCATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCTTCTCATCATCATCCAATAAATTCCAACAATAATAATGCAAACAACACAAGCTGTCTCTTCCTTCCCATCCCTAATTCCACTAATACTAATAATAATCACTACACCAACACCAACAACAACTGTAATAACATTAACAACACCTCTTCTATCATGCTTCAAAATAATCACCACACCACACACAACACTCCTGGATTAGGCTACTATTTCATGGACAACAACAACAACAATGGAGGATCCTCTTCTTCTTCCTCTTCTGCTGTTAAAGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGTCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGAGAATGGGTGGTGAAGCAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAATATGAACAAGAACTCTCCAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAACCTCACTGTTTCTTCTTCTTCAGACAATATTGGTTGTAATGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGACCAAGTTGATATATACAACAACATGATAGATCCTCAGGCAGAAGACAGGGAATTAAAGGGCCAGCTTTTGAGAAAGTACAGTGGATATTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAAAGGAAAAAAGGAAAACTACCAAAAGAAGCAAGGCAGCAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTGGCTTTAGCAGAATCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTCATGGATCCAACCCATCCACATTATTATATGGATAATGTTCTCACCAATTCATTTCCCATGGATTTATCTAACACCATGCTCTAG 1140 0.4026 MEGSSNGSSSYVMGAFGENSGGLCPPMMMMPLVTSSHHHPINSNNNNANNTSCLFLPIPNSTNTNNNHYTNTNNNCNNINNTSSIMLQNNHHTTHNTPGLGYYFMDNNNNNGGSSSSSSSAVKAKIMAHPHYHRLLEAYINCQKVGAPSEVVSRLEEACASAVRMGGEAVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIGCNEGGDRNGSSEEDQVDIYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPTHPHYYMDNVLTNSFPMDLSNTML 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09896 379 SMART ELK_2 261 282 IPR005539 GO:0003677
Vifa1g09896 379 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Vifa1g09896 379 Pfam KNOX1 domain 121 160 IPR005540 GO:0003677|GO:0005634
Vifa1g09896 379 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Vifa1g09896 379 SMART HOX_1 283 348 IPR001356 GO:0003677
Vifa1g09896 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 350 - -
Vifa1g09896 379 Gene3D - 286 348 - -
Vifa1g09896 379 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Vifa1g09896 379 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Vifa1g09896 379 Pfam ELK domain 261 282 IPR005539 GO:0003677
Vifa1g09896 379 CDD homeodomain 293 345 IPR001356 GO:0003677
Vifa1g09896 379 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Vifa1g09896 379 SUPERFAMILY Homeodomain-like 283 359 IPR009057 -
Vifa1g09896 379 FunFam Homeobox protein knotted-1-like 2 286 348 - -
Vifa1g09896 379 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Vifa1g09896 379 Pfam KNOX2 domain 174 221 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09896 Vifa-Chr1 1617318861 1617323445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09896 122 379 Homeobox Transcription Factor Family AT1G62360 79.848 2.88e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa1g09896 KNOX2 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09896 - - gmx:100805837 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09896 1 1617318861 1617323445 Vifa1g09896 1 1617318861 1617323445 ECH