Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09892 ATGAAATCGGCGACAAGGTACAGGAAAACCTCTTGTGCCCGTGTTATTGCCAATCAAGCGGGCGTCCCTTTGCTTTATGTTCCACTTGAGGTAGTGATGTCTGAATACTATGGTAAAAGTGAACGCCTTCTAGGGAAAGTGTTTTCACTAGCAAACAGTCTTCCCAATGGCGCTATTATATTTTTGGATGAGATTGATTCTTTAGCTGCTGCTCGTGATGGCGAAATGCATGAAGCTACACGTAGATTATTGTCAGTATTATTGCGGCAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAGGAAGATCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCGCTTTTGGTTTACCTGATCATCATAATCGTCAAGAAATAGCATCCAAATATGCAAAGCACCTGCCCAAACCGAACTTGATGAACTTGCACGAGCTACAGAAGATATGGCTGGAAGAGATATTAGAGATATTTGTCTGCAAGCGGAACGAACCTGGGCATCAAAGATTATTCGGGGACAAACGGGATTCACTGCTTAGTGCTGCTGCAAATAGGAAGCCCGGGCGTTCACGTTCTTCCCGCAACAGGATAATAAATGAATAA 633 0.4281 MKSATRYRKTSCARVIANQAGVPLLYVPLEVVMSEYYGKSERLLGKVFSLANSLPNGAIIFLDEIDSLAAARDGEMHEATRRLLSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIAFGLPDHHNRQEIASKYAKHLPKPNLMNLHELQKIWLEEILEIFVCKRNEPGHQRLFGDKRDSLLSAAANRKPGRSRSSRNRIINE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09892 210 Gene3D - 8 147 IPR027417 -
Vifa1g09892 210 Pfam ATPase family associated with various cellular activities (AAA) 9 127 IPR003959 GO:0005524|GO:0016887
Vifa1g09892 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 146 IPR027417 -
Vifa1g09892 210 CDD RecA-like_protease 9 126 - -
Vifa1g09892 210 ProSitePatterns AAA-protein family signature. 100 119 IPR003960 GO:0005524|GO:0016887
Vifa1g09892 210 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 9 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09892 Vifa-Chr1 1614762602 1614765221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09892 9 159 Calmodulin-binding Proteins AT3G56690 36.538 3.01e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09892 - - gmx:100803362 265.003