Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09884 ATGAGTCAACTCGGCTTGTTATTGCAGGAATCTCGGGGTGAGTCAAGAACGATTCTCGGGTTGTTAAACGAACAAATGGACGCTGTTGGTGGAGTTTCTCGTAGGAGGCGTAGCTTTAAGGAACGGTTTGGATTCATCAGGATAGGTTGCTGTGGAACAACACGGGGCTTTCGTTCTTCTTCTTCTTCACCTCAATTGCCTCACTCTCAGCAACAAATTTCGGATACGGATCCGGTTCAGGATCCGAGCGTCTGCGTTGGACCGAATCCAACTGCTTCGAGTTTGAATTCCAGTTCGAGTACCGGTAATATGAATCTTGCGGCGGCCTTGGCGGCGGAGAGGCAACTCCGAAGACCGGCGCCGGAGACTACCGTCATCGGAGGGGGTAGGACTCCGGGAACACCGTGGAGAGTGTCGTTGATGAGGCTGTTAGAGGAGACGGAAAACGGTGACACGGTGGCGGAAAAGGCTGTGAGTGAGGTAAAAGTTGGTGATGTGGCGGGGAATAATTCGGTGTGTTGCGTGTGCATGGGAAGGAATAAAGGCGCGGCGTTTATTCCGTGTGGACACACTTTTTGCAGAGTTTGTTCTAGGGAGCTGTGGCTGAACAGAGGCTCCTGTCCACTTTGTAACCGTTCCATTCTTGAGATTCTTGACATTTTCTAG 666 0.5135 MSQLGLLLQESRGESRTILGLLNEQMDAVGGVSRRRRSFKERFGFIRIGCCGTTRGFRSSSSSPQLPHSQQQISDTDPVQDPSVCVGPNPTASSLNSSSSTGNMNLAAALAAERQLRRPAPETTVIGGGRTPGTPWRVSLMRLLEETENGDTVAEKAVSEVKVGDVAGNNSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09884 221 Pfam Zinc finger, C3HC4 type (RING finger) 170 215 - -
Vifa1g09884 221 MobiDBLite consensus disorder prediction 56 79 - -
Vifa1g09884 221 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Vifa1g09884 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 220 IPR013083 -
Vifa1g09884 221 MobiDBLite consensus disorder prediction 56 100 - -
Vifa1g09884 221 PANTHER OS01G0917900 PROTEIN 9 221 - -
Vifa1g09884 221 SUPERFAMILY RING/U-box 172 218 - -
Vifa1g09884 221 SMART ring_2 173 210 IPR001841 -
Vifa1g09884 221 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09884 Vifa-Chr1 1612297673 1612298338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09884 18 221 C3H Transcription Factor Family AT4G22250 49.282 7.55e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09884 - - gmx:100804292 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09884 1 1612297673 1612298338 Vifa1g09884 1 1612297673 1612298338 ECH