Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09883 ATGGAAAACCCTCTTCCATCTCCTCCAAACCCTAACAATGCCCAACTTCCCACCGAAGTAAACGACGACATCGACGAACAAGTAGCTGAAGAAGAACATGACGACGAAGAGCAACGAGGAGAAGACGAAACCCTAGAAAACCAAAACCAACAAGCCGTCGTGGAAGTTTTAAATCCAACTGCGGCTTCGACCGAGACTGTCAAAGCTAACAGTGTTGAGGAAATAGAAACTAACAATGAAGAAGAGGAAGATATCGATTTGGAAGACGAGCTTGTTAAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTCGTGAAGCAAGCGATTGAGAAGTATCCCGATCTATCGGAGAATGTTCATTCGCTGCCTGATGTAGACCCAACTCAAAGGAAAACTTTCATTCATGGACTTGGATGGGATGCAACTTCCAAAACCCTAACCAGAGTGTTTCACAAATACGATGAAATTGAAGACTGTAAGGCGGTTACTGATAAAACATCTGGAAAATTGAAGGGTTATGCTTTTATGATAAAGTGTTGTGTTTCATATGCAACGAGTGAGGTAGGGGTGTTCGCGGTGCGGTTTGGGCGATTTTGA 606 0.4389 MENPLPSPPNPNNAQLPTEVNDDIDEQVAEEEHDDEEQRGEDETLENQNQQAVVEVLNPTAASTETVKANSVEEIETNNEEEEDIDLEDELVKKLLEPFTKEQLHALVKQAIEKYPDLSENVHSLPDVDPTQRKTFIHGLGWDATSKTLTRVFHKYDEIEDCKAVTDKTSGKLKGYAFMIKCCVSYATSEVGVFAVRFGRF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09883 201 Gene3D - 131 179 IPR012677 -
Vifa1g09883 201 MobiDBLite consensus disorder prediction 1 84 - -
Vifa1g09883 201 MobiDBLite consensus disorder prediction 23 42 - -
Vifa1g09883 201 SUPERFAMILY RNA-binding domain, RBD 118 178 IPR035979 GO:0003676
Vifa1g09883 201 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 38 178 - -
Vifa1g09883 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 179 IPR000504 GO:0003723
Vifa1g09883 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 179 IPR000504 GO:0003723
Vifa1g09883 201 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09883 Vifa-Chr1 1612241956 1612242561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09883 82 180 C2H2 Transcription Factor Family AT2G19380 37.374 2.70e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09883 K12741 - gmx:100783742 149.443