Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09857 ATGGCTATGGCTTCACCAGACTCTTCAAACGCTACCGGTGGTAGCTCCTTCGCTGCAACAACTACCTTCAAGCAGAAGATCTCTGTCAAACTCGACGACACCAACTATCGTCAATGGAAGCAACAGGTCGAAGGCGTTCTTCGTGGCACCAAAATGGTTCGCTTCGTCGTTTCTCCTCAAGTACCGGAACGCTACCTCACTGTTGCTGATCGCGACGTCGGAACTGAGAATCCGAACTATGTCGCGTGGGAGGAGCAAGACGCTCTTCTCTTCATGTTTTCCTCTTCATCCTCCCCTACTAGTCCTACACCTTGTTCTGCAAACTCTCAAGGTTATTTTACTCCTTTACCTGTGCCTCTCACTGCTGTACCTCCATCACAATCTCAGAGTCATGCTGGCCTCATTACTCCTGTCATATCTCATAATAGTTCTGTATCAGACTCCAACACTGCCTCTTCTGAAGCTCATGAGTTAGCTTCTCTAGCCTCTGCCTCAACCATTGCTCCAGTCTCAGACACCACTGCATCAGTCACAGAATTGCCTGCAACTGCAGCTGTTAGCCATGAACAGGCTCTCTCTTCACCTGCTGTTCCTGCCTCCGGTTTCTCTACTCCTGCCGCTTCTGATTCCTCCACTGCAGTAGCTCCTGGGAGAGCAGGAAGTGGGATCATCATCACAACACGAGAAGAAAGAGTTGCAGTATCCATGCATACATTTGTTTTTGTTCACTATTTGAGACCTCTGAAAAGTGAAGATTGCTTGTCTATAGTTACCAGACTTGCATTTGGAGCACACTACCAACAACAAATGGATGAATTTGACAGGAAAGTAGAGAAAAAATGTGATGGAGTACCACTAGCTGCAGTAGTACTTGGCAGGGCTCTTTTTCACGCCAAATTTGCTCTGGGATTTTGTGCTTCGAAGAATATCACTGAGGTTCCCAACTCTATTGGAAATTTGTTACACCCGCGGTACTTAAATCTTTCTTACACTAAGATTGAAAGGTTGCCTTCAGCAACATGCCAGCTTTACAATCTGCAATTCTTATTGGTGTCGGGCTGTAAAAGGCTCTCTGAGTTGCCAGAGGACATCGGAAAATTGGATAATCTACGCCACCTTGACGTCAGTGGGAGTGCATTGAGGGAGATAGCCATACAAATTGCCAAACTAGAAAATCTCCAAACTTTGTCCGACTTTGTTGTTAGCAAACATAATGGTGGGTTGAAGGTTAGAGGACATGCAAGAGTGGGAGGAATGGAACTTGATTGGAGGTATGGCTACAGAGTTTCCTAG 1293 0.4625 MAMASPDSSNATGGSSFAATTTFKQKISVKLDDTNYRQWKQQVEGVLRGTKMVRFVVSPQVPERYLTVADRDVGTENPNYVAWEEQDALLFMFSSSSSPTSPTPCSANSQGYFTPLPVPLTAVPPSQSQSHAGLITPVISHNSSVSDSNTASSEAHELASLASASTIAPVSDTTASVTELPATAAVSHEQALSSPAVPASGFSTPAASDSSTAVAPGRAGSGIIITTREERVAVSMHTFVFVHYLRPLKSEDCLSIVTRLAFGAHYQQQMDEFDRKVEKKCDGVPLAAVVLGRALFHAKFALGFCASKNITEVPNSIGNLLHPRYLNLSYTKIERLPSATCQLYNLQFLLVSGCKRLSELPEDIGKLDNLRHLDVSGSALREIAIQIAKLENLQTLSDFVVSKHNGGLKVRGHARVGGMELDWRYGYRVS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09857 430 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 307 401 - -
Vifa1g09857 430 Gene3D Ribonuclease Inhibitor 301 410 IPR032675 -
Vifa1g09857 430 Pfam NB-ARC domain 217 299 IPR002182 GO:0043531
Vifa1g09857 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 298 IPR027417 -
Vifa1g09857 430 SUPERFAMILY L domain-like 308 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09857 Vifa-Chr1 1606876000 1606881993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09857 310 405 WRKY Transcription Factor Family AT4G12020 34.021 3.24e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09857 - - tpra:123913254 162.54