Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09844 ATGATGAGCCCTTTGATAAGAATTGCGTTAGCAATAAACTTAATATGTAACAACCATACCGTAAAAATCCTGATGAAATACTCAACTCACCTTCATATTTTTCTGAAGTGGATATTCAACATCTTCTCTTACTACCTGTCCTATCCCTTATGCAAATTCCAGTGTTTTCATGGTGTGTCCAAATACGTGAATGAATCTCAAGAAGATGTAGATTGTGCTGTCTGTCTCAGCAAGGTGAAAGAAAAGGAAGAGATTAGTGAGTTGCAGTGTAAACATGTGTTTCACAAAGATTGTTTAGAAACTTGGATTAGCTTCAAATGCTACAATACAACTTGTCCTATCTGTAGAGTTTCAGTAGGTTTAGTAAGGGAAATGGATGATCAATGGTTTAATGAGGAGGATTTTCAGATTTCGTGGCTGCGTTGA 426 0.3638 MMSPLIRIALAINLICNNHTVKILMKYSTHLHIFLKWIFNIFSYYLSYPLCKFQCFHGVSKYVNESQEDVDCAVCLSKVKEKEEISELQCKHVFHKDCLETWISFKCYNTTCPICRVSVGLVREMDDQWFNEEDFQISWLR 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09844 141 SMART ringv_2 71 116 IPR011016 GO:0008270
Vifa1g09844 141 PANTHER - 63 121 IPR044249 -
Vifa1g09844 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 128 IPR013083 -
Vifa1g09844 141 SUPERFAMILY RING/U-box 66 122 - -
Vifa1g09844 141 SMART ring_2 72 115 IPR001841 -
Vifa1g09844 141 Pfam Ring finger domain 71 116 IPR001841 -
Vifa1g09844 141 ProSiteProfiles Zinc finger RING-type profile. 72 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09844 Vifa-Chr1 1603153010 1603153435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09844 71 119 C3H Transcription Factor Family AT1G15100 57.143 8.33e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09844 K16282 - mof:131154354 73.559