Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09826 ATGGATTCCCCTTTTGCGGCATTACCCCACGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAAGAAGGAGATCTTGTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCATGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGTCGTGGCATATCGACAAATGTCATTATTGTTATGCCGACCACCAGGCCGTGAGGCTTTCCCAGGAGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTAGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTTGGCTACCTTTGCTCAAAAAATCCCACTGA 1002 0.4581 MDSPFAALPHGVKGIALNLENENVGIVVFGSDTSIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQVVAYRQMSLLLCRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSWLPLLKKSH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09826 333 FunFam ATP synthase subunit alpha, mitochondrial 47 327 - -
Vifa1g09826 333 CDD F1-ATPase_alpha_CD 47 324 IPR033732 GO:0032559
Vifa1g09826 333 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 7 47 IPR036121 GO:0046034|GO:1902600
Vifa1g09826 333 Pfam ATP synthase alpha/beta family, beta-barrel domain 10 45 IPR004100 GO:0046034|GO:1902600
Vifa1g09826 333 Gene3D - 7 332 - -
Vifa1g09826 333 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 102 324 IPR000194 GO:0005524
Vifa1g09826 333 NCBIfam F0F1 ATP synthase subunit alpha 7 324 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g09826 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 325 IPR027417 -
Vifa1g09826 333 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 10 324 IPR005294 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09826 Vifa-Chr1 1598721883 1598723170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09826 13 332 Primary Pumps ATPases(2) AT4G38510 25.836 3.97e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09826 K02132 - mnt:39338970 603.208