Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09825 ATGGATTCCCCTTTTGCGGCATTACCCCACGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAAGAAGGAGATCTTGTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCATGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGTCGTGGCATATCGACAAATGTCATTATTGTTATGCCGACCACCAGGCCGTGAGGCTTTCCCAGGAGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTATCAGTCGCGTCGGGTCTGCCGCTCAGTTGA 939 0.4675 MDSPFAALPHGVKGIALNLENENVGIVVFGSDTSIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQVVAYRQMSLLLCRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDSSFIAELDLLLTSAYLSVASGLPLS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09825 312 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 102 289 IPR000194 GO:0005524
Vifa1g09825 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 289 IPR027417 -
Vifa1g09825 312 CDD F1-ATPase_alpha_CD 47 292 IPR033732 GO:0032559
Vifa1g09825 312 Gene3D - 7 297 - -
Vifa1g09825 312 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 10 289 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g09825 312 FunFam ATP synthase subunit alpha, mitochondrial 47 301 - -
Vifa1g09825 312 Pfam ATP synthase alpha/beta family, beta-barrel domain 10 45 IPR004100 GO:0046034|GO:1902600
Vifa1g09825 312 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 7 47 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09825 Vifa-Chr1 1598721883 1598723083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09825 13 281 Primary Pumps ATPases(2) AT4G38510 24.460 6.06e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09825 K02132 - csav:27215489 531.946