Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09819 ATGGTTTCTCTAGAAGAATCTCGTTCGAGTTCGAATCGTTTTCCTTTACCACGAAGCTTTCAGTATCATAATCATTCGTCTGTTTCTTCGAAATCGCAGCGGAATATTGGAAGATCCATGCGAACCAGAAGATCTAGTATCTTTGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCAACGTGTGTATCGGAGAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTCGCTTCCCGGAATATTAAATCCGGGAGGTTGTCTACGACTGAGCAGGAGCTTCTTGATCTTTCGCAGGCTTTTAGTGAGTATTCTGCTTGTAGTAGTGATATTTCCGGTGAGCTGCAGCGGTTGGCGACTCTGCCGTCGCCGGAGTGTAATCGGAAGAGTGATAGTGGAGGAGATGGTGGGGAGGAAGTTGAGGTGGAGCCTTGCATGGGGTTTTTGCAGAGGGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGTGTTGATGGTTTACAGTCTTCGTCGGTGGCGGTGAAACGTTCTGCTGCGGCGAAGCTGAGGCTGCTTGCTAAGAATAGGGCTGATAATAGAGTTCTGATTGGTGAGTCCGGTGCGGTGCCGTTTCTGGTTCCTCTGCTGAGATGTACTGATCCATGGACGCAAGAACATGCTGTGACCGCGCTTTTGAATCTGTCGCTTCACGAGGATAACAAGAAGGTAATATTCAATGCAGGAGCTGTGAAATCGTTGATTTATGTGTTGAAAACAGGGACGGAAACTTCGAAGCAGAACGCGGCTTGTGCGCTTCTGAGCTTGGCTTTGGTGGAAGAGAATAAGAGCTCAATTGGCGCTTCTGGGGCGATTCCGCCGTTGGTTTCGCTTCTACTAAACGGTTCGAACAGAGGGAAGAAAGACGCGCTGACGACACTTTACAAGCTTTGTTCTGTTAAGCAGAACAAGGAGAGAGCGGTGAGTGCCGGTGTGGTGAAGCCGCTTGTGGAGCTGGTGGCGGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGATTGAGGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATAGCGGCACTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAAGAATTTGCTGTTTTGACTCTTCTTCAGCTTTGTGCTGACAATGTTACAAGCAGAGGGTTACTTGTTAGAGAGGGTGGGATTCCTCCCCTTGTAGCTCTTTCCCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCAACTTCAACTTCTTAG 1380 0.4826 MVSLEESRSSSNRFPLPRSFQYHNHSSVSSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNIKSGRLSTTEQELLDLSQAFSEYSACSSDISGELQRLATLPSPECNRKSDSGGDGGEEVEVEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPFLVPLLRCTDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADNVTSRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09819 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 214 256 IPR000225 GO:0005515
Vifa1g09819 459 MobiDBLite consensus disorder prediction 1 42 - -
Vifa1g09819 459 FunFam U-box domain-containing protein 4 313 454 - -
Vifa1g09819 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Vifa1g09819 459 PANTHER U BOX DOMAIN-CONTAINING 123 448 - -
Vifa1g09819 459 Gene3D - 316 458 IPR011989 -
Vifa1g09819 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Vifa1g09819 459 Gene3D - 154 315 IPR011989 -
Vifa1g09819 459 SMART arm_5 244 284 IPR000225 GO:0005515
Vifa1g09819 459 SMART arm_5 409 449 IPR000225 GO:0005515
Vifa1g09819 459 SMART arm_5 203 243 IPR000225 GO:0005515
Vifa1g09819 459 SMART arm_5 367 407 IPR000225 GO:0005515
Vifa1g09819 459 SMART arm_5 285 325 IPR000225 GO:0005515
Vifa1g09819 459 FunFam U-box domain-containing protein 4 160 312 - -
Vifa1g09819 459 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g09819 459 SUPERFAMILY ARM repeat 170 448 IPR016024 -
Vifa1g09819 459 Pfam Armadillo/beta-catenin-like repeat 287 325 IPR000225 GO:0005515
Vifa1g09819 459 Pfam Armadillo/beta-catenin-like repeat 205 242 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09819 Vifa-Chr1 1598636098 1598638016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09819 151 452 U-box Gene Family AT2G23140 49.032 5.35e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09819 - - tpra:123898555 793.112