Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g09817 | ATGGATCCTGGGAAGCTGTTCATTGGAGGGATTTCCTGGGATACTAATGAAGACCGACTCAGACAGTATTTTCAGAGCTTTGGTGATGTGGTTGAGGCGGTGATTATGAAGGATCGGACCACGGGACGGGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAACGAGTTGTTGTTGAAAAACATGTCATAGATGGGAGAACTGTTGAAGCAAAAAAAGCTGTCCCTCGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCACGGGTCGCCGGGTCCTACTCCTATACGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAGTTACTTTGATCAATTTGGAACAATTACCGATGTTGTTGTGATGTATGACCATAACACTCAGCGACCTAGAGGTTTTGGTTTCATCACATTTGATTCTGAGGAAGCGGTCGAGAAAGTGCTGCATAAAACTTTCCACGAGCTTAACGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCCAAGGAGTTATCCCCCGGTCCAAGTAGAGGCCAACTAGGTGGATTTAGTTACGGTAATATGAATAGGGTTAGTAGTTTTTCTAATGGTTTCACACAGGGATATAATCCAAACCTCATTGGAGGACATGGACTTAGAATAGACGGTAGATTGAGCCCTGCTAATGTTGGCCGTAATGGATACACTCTTTTCAGTCCAAGTTATGGGACAGGACTCAACTTTGAGCCACCGTTGAATGAAAATGAGAACTTGTCTAACTTTGTCATGGGACGCGCATTGAGCTCTCCATACAGTGCAAGTCCGAGCCGGTACAATAATGCCATGGGGTATGTTGGTTCAAATGTTGGCAACAATTCAACCATAAGTTCAACCAATCAGAGTTTGTGGAGTAACGGAAATCTTAACTATGCTAATAATCCTGCAAACCCCGACTCTTTCCTAGGTTATGGAAATGAAAGTTCAAGTATCGGTTCTTTTGGTAATATCGGATCACTCTGGAGTACCTCTGTCGGTTCTAATAATCAAGCTGGAACTATTGGGTCTGGATATGGTAAGAGCAATCCTAGTTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCCGTAGGTTACGGAAAGAGTAGTGAAGGCATTGTTGAATCAGATTTGTCATATGCTTTCTCAAATGGCAATTATGGTGAGGCGTACAAAAGTAATTATGACGCCGCACCATTTTATCAAGACCATACTTGGAAATCAACAACTTCTGAACTAGAGGATCCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGTTCTAGTGGTGGTCACGTTGGAGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCTTAG | 1431 | 0.4291 | MDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVVEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTESDFKSYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGNMNRVSSFSNGFTQGYNPNLIGGHGLRIDGRLSPANVGRNGYTLFSPSYGTGLNFEPPLNENENLSNFVMGRALSSPYSASPSRYNNAMGYVGSNVGNNSTISSTNQSLWSNGNLNYANNPANPDSFLGYGNESSSIGSFGNIGSLWSTSVGSNNQAGTIGSGYGKSNPSYRLGDVILGSKAVGYGKSSEGIVESDLSYAFSNGNYGEAYKSNYDAAPFYQDHTWKSTTSELEDPGSLSFGLENAVSDLMRKSSSGGHVGAYAVANRQSNRGIAA | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g09817 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 166 | IPR000504 | GO:0003723 | |
Vifa1g09817 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 72 | IPR000504 | GO:0003723 | |
Vifa1g09817 | 476 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 2 | 472 | - | - | |
Vifa1g09817 | 476 | Gene3D | - | 3 | 86 | IPR012677 | - | |
Vifa1g09817 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 80 | IPR000504 | GO:0003723 | |
Vifa1g09817 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 100 | IPR035979 | GO:0003676 | |
Vifa1g09817 | 476 | Gene3D | - | 103 | 189 | IPR012677 | - | |
Vifa1g09817 | 476 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 3 | 85 | - | - | |
Vifa1g09817 | 476 | CDD | RRM2_Hrp1p | 107 | 184 | - | - | |
Vifa1g09817 | 476 | CDD | RRM1_hnRNPA_hnRNPD_like | 6 | 76 | - | - | |
Vifa1g09817 | 476 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Vifa1g09817 | 476 | SMART | rrm1_1 | 5 | 76 | IPR000504 | GO:0003723 | |
Vifa1g09817 | 476 | MobiDBLite | consensus disorder prediction | 84 | 100 | - | - | |
Vifa1g09817 | 476 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - | |
Vifa1g09817 | 476 | MobiDBLite | consensus disorder prediction | 79 | 102 | - | - | |
Vifa1g09817 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 98 | 208 | IPR035979 | GO:0003676 | |
Vifa1g09817 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g09817 | Vifa-Chr1 | 1597928679 | 1597930859 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g09817 | 6 | 219 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.378 | 2.84e-16 | 79.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g09817 | K14411 | - | cave:132171089 | 593.964 |