Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09817 ATGGATCCTGGGAAGCTGTTCATTGGAGGGATTTCCTGGGATACTAATGAAGACCGACTCAGACAGTATTTTCAGAGCTTTGGTGATGTGGTTGAGGCGGTGATTATGAAGGATCGGACCACGGGACGGGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAACGAGTTGTTGTTGAAAAACATGTCATAGATGGGAGAACTGTTGAAGCAAAAAAAGCTGTCCCTCGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCACGGGTCGCCGGGTCCTACTCCTATACGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAGTTACTTTGATCAATTTGGAACAATTACCGATGTTGTTGTGATGTATGACCATAACACTCAGCGACCTAGAGGTTTTGGTTTCATCACATTTGATTCTGAGGAAGCGGTCGAGAAAGTGCTGCATAAAACTTTCCACGAGCTTAACGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCCAAGGAGTTATCCCCCGGTCCAAGTAGAGGCCAACTAGGTGGATTTAGTTACGGTAATATGAATAGGGTTAGTAGTTTTTCTAATGGTTTCACACAGGGATATAATCCAAACCTCATTGGAGGACATGGACTTAGAATAGACGGTAGATTGAGCCCTGCTAATGTTGGCCGTAATGGATACACTCTTTTCAGTCCAAGTTATGGGACAGGACTCAACTTTGAGCCACCGTTGAATGAAAATGAGAACTTGTCTAACTTTGTCATGGGACGCGCATTGAGCTCTCCATACAGTGCAAGTCCGAGCCGGTACAATAATGCCATGGGGTATGTTGGTTCAAATGTTGGCAACAATTCAACCATAAGTTCAACCAATCAGAGTTTGTGGAGTAACGGAAATCTTAACTATGCTAATAATCCTGCAAACCCCGACTCTTTCCTAGGTTATGGAAATGAAAGTTCAAGTATCGGTTCTTTTGGTAATATCGGATCACTCTGGAGTACCTCTGTCGGTTCTAATAATCAAGCTGGAACTATTGGGTCTGGATATGGTAAGAGCAATCCTAGTTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCCGTAGGTTACGGAAAGAGTAGTGAAGGCATTGTTGAATCAGATTTGTCATATGCTTTCTCAAATGGCAATTATGGTGAGGCGTACAAAAGTAATTATGACGCCGCACCATTTTATCAAGACCATACTTGGAAATCAACAACTTCTGAACTAGAGGATCCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGTTCTAGTGGTGGTCACGTTGGAGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCTTAG 1431 0.4291 MDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVVEKHVIDGRTVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTESDFKSYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGNMNRVSSFSNGFTQGYNPNLIGGHGLRIDGRLSPANVGRNGYTLFSPSYGTGLNFEPPLNENENLSNFVMGRALSSPYSASPSRYNNAMGYVGSNVGNNSTISSTNQSLWSNGNLNYANNPANPDSFLGYGNESSSIGSFGNIGSLWSTSVGSNNQAGTIGSGYGKSNPSYRLGDVILGSKAVGYGKSSEGIVESDLSYAFSNGNYGEAYKSNYDAAPFYQDHTWKSTTSELEDPGSLSFGLENAVSDLMRKSSSGGHVGAYAVANRQSNRGIAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09817 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vifa1g09817 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Vifa1g09817 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 472 - -
Vifa1g09817 476 Gene3D - 3 86 IPR012677 -
Vifa1g09817 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vifa1g09817 476 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Vifa1g09817 476 Gene3D - 103 189 IPR012677 -
Vifa1g09817 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 85 - -
Vifa1g09817 476 CDD RRM2_Hrp1p 107 184 - -
Vifa1g09817 476 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Vifa1g09817 476 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vifa1g09817 476 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vifa1g09817 476 MobiDBLite consensus disorder prediction 84 100 - -
Vifa1g09817 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vifa1g09817 476 MobiDBLite consensus disorder prediction 79 102 - -
Vifa1g09817 476 SUPERFAMILY RNA-binding domain, RBD 98 208 IPR035979 GO:0003676
Vifa1g09817 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09817 Vifa-Chr1 1597928679 1597930859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09817 6 219 Eukaryotic Initiation Factors Gene Family AT2G36660 28.378 2.84e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09817 K14411 - cave:132171089 593.964