Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09812 ATGCCAACTTCTCAAGAACAATCAAATTCAGCTGGTAACCATCTATACCAACACCAGCTTATGAAACAAACTGATTCATACAACAGTCATTACAAAATATTACAAAGCAATTCATCATGTCTTGGTAGTAGTCATGGAACCAATGTTTCTTTCGGAACAAGCAACAAGGAGAAAAAATTCTTTACCTTGGAATCATCTCAACCAAATTCCGATTCCTTAGCTTTTGAGTCTCCTTCATCCGCTAGTGTTTCGTCCAACATCAGAAGTCCTTTTTCTCGGCAACTTTCTCAGGATTCCGCCTCTGACAACAATTCGCCGATAAGTGTTGTTGTTGATGATGATAGATTTGAGTTGAAAAAAAAACTCAGAGAATTGGAGATTTCGTTGTTAGGTCCCGAGTCGGATATCGTCGACAGCTGTCAGAGCTTCTCGAACGGTGTGTCTCGATATAATTGGGGTGAGATTCAAGAAATGATTCCAAAGATGGATTTGAAGGAAATACTTATTAAATGTGCACAAGCTGTTTCTGATGATGATATTGAAACGGCATTGGGATTCATGAACAATGTGCTGGAAAAGATGGTATCGGTCGGCGGTGAACCTAGTCAAAGATTAGGTGCTTATATGTTAGAAGGTTTAAGAGCGAGGTTGGAATCGTCGGGGAGCGCGATTTATAAATCGTTCAAGTGTGAAGAACCAACAAGCAAAGAATTGATGAGTTATATGTATATATTGTATCAGATTTGCCCTTATTGGAAGTTTGCTTACTTAACTTCCAATGTTGCCATTTCGGAAGCTATGAAAAATGAGTCGAGAATTCACATAATCGACTTCCAAATTGCACAGGGAACACAGTGGTTGTCACTCATGGAGGCTCTCGCGCGTAGACCGGGCAGGCCTCCTTTTATTCGTGTAACAGGTGTCGATGATTTCCAATCGCTTCACGCTAGAGGCGGAGGACTTGATATCGTAGGAAAAAAGCTAATGGATTACGCTAAAACTTGTGGAATTCCGTTTGAGTTCAATAGTGTTACAATGTTTGGATGCGAGGTTCAGCAAAAAGATTTTGTACTTCAAAATGGCGAAGCTCTGGCTGTGAATTTTCCTTTTACTTTGCATCACATGCCGGACGAGAGTGTGAGCACGGAGAATCATAGAGACCGGCTTTTGAGATTGGTTAAGAGTTTGTCGCCTAAGGTTGTGTTACTTGTGGAGCAAGAATCAAACACAAACACTTCTCCGTTTTTTCACAGGTTTGTCGAGACTATGAATTATTACACGGCAATGTTTGAATCAATCGATGTGGCTCTCCCTAGAGATGATAAGACAAGGATAAGTGTAGAACAGCATTGCGTCGCACGAGATATCGTTAACATGATAGCTTGTGAGGGGAATGAGAGAGTGGAAAGACATGAAATGTTTGGAAAGTGGAAGGCAAGATTATCAATGGCGGGTTTTGTTCCGTTACCGTTGAGTCCTTCGGTGACAGCTTCGGTTACAAATCTGTTGAAGGAGTTCAATGAGAATTATAGGATTGAACAATCAGATGTTGCTCTTTATTTAGCATGGAAGAGTAGAGCTTTGGCCACATTTTCTGTTTGGAAACCCAAGCTAGGTGAGGATTCTTCACTCATAATGTAG 1641 0.4089 MPTSQEQSNSAGNHLYQHQLMKQTDSYNSHYKILQSNSSCLGSSHGTNVSFGTSNKEKKFFTLESSQPNSDSLAFESPSSASVSSNIRSPFSRQLSQDSASDNNSPISVVVDDDRFELKKKLRELEISLLGPESDIVDSCQSFSNGVSRYNWGEIQEMIPKMDLKEILIKCAQAVSDDDIETALGFMNNVLEKMVSVGGEPSQRLGAYMLEGLRARLESSGSAIYKSFKCEEPTSKELMSYMYILYQICPYWKFAYLTSNVAISEAMKNESRIHIIDFQIAQGTQWLSLMEALARRPGRPPFIRVTGVDDFQSLHARGGGLDIVGKKLMDYAKTCGIPFEFNSVTMFGCEVQQKDFVLQNGEALAVNFPFTLHHMPDESVSTENHRDRLLRLVKSLSPKVVLLVEQESNTNTSPFFHRFVETMNYYTAMFESIDVALPRDDKTRISVEQHCVARDIVNMIACEGNERVERHEMFGKWKARLSMAGFVPLPLSPSVTASVTNLLKEFNENYRIEQSDVALYLAWKSRALATFSVWKPKLGEDSSLIM 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09812 546 MobiDBLite consensus disorder prediction 67 88 - -
Vifa1g09812 546 ProSiteProfiles GRAS family profile. 155 535 IPR005202 -
Vifa1g09812 546 Pfam GRAS domain family 165 535 IPR005202 -
Vifa1g09812 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 98 534 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09812 Vifa-Chr1 1596682791 1596684431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09812 48 536 GRAS Transcription Factor Family AT4G17230 57.800 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g09812 GRAS 2e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09812 - - gmx:100817987 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09812 1 1596682791 1596684431 Vifa1g09812 1 1596682791 1596684431 ECH
Vifa4g05005 4 1572213247 1572214878 Vifa1g09812 1 1596682791 1596684431 PCT
Vifa1g09812 1 1596682791 1596684431 Vifa1g03418 1 531641444 531643015 PCT