Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09809 ATGGCTAATGTTGATTGGGATCTCTTTTCTATTGTGCGTAGCTGCAAAACTAGCACCTTAACTCCTCCTTCCTCTATTTTTGAAACCTCACCTCACACCCCATTTTACTTTGATGATTTTACTTTGTCCCATGAAAATAACCCAATTCCTAACATTAACACTAGTATTAATGAAACCAACCATTATCCTACTGTTTTGGATTTTCCAATATTTGTCGGACAACAACAAATTACGCCAAACGACAACAATCAAATGGTTTTCCCAAAACCTGCTGCCTACGTTGAAATTACAACTCAACATTTTGATTTTGCATACAACCATCCATCGGTTCTCCATGAACTCCAGAGAGAGCGCAATCAACTACCAATTCAAGAACCCCGAACTCGTTTTGGGATCGTACCAAATACACTTTCACAGCATTCAAAACGAAAATCTTGGAAAAGGAAGAATAAAAACACCAAGACTTTGGAGTGCCATTTGAGTGTAGAGAAGATCAAAGAAGATCCGTGGACATGGAGAAAATATGGAGAAAAAATCATCAAAGGGTCTTCACATCCAAGGAGCTACTACAAATGTAGCAGCTTCAATGACTGTCCAGCAAAAAAACTAGTAGAAAAAAGCAAAAACAAAGATAACACTTATGTTGTGACGTATAAAGGACAACACAATCATAAAGAGCCAAAATGTAACGATAGATCTATCATTGGTACTTCCCGAAACAATTCATCAAAGAGAGTATTATCTACTGCTAAAGGTGTTGAGTCATCCTCAACTCAATCAAAAGTCCTATATCCAGAAAATGAACTTACAAATAAACATTTTCTTGTTTCCCAAGAAGATGTACCGTCTTCAAATGTCGGAAACTTGAGTTCATCTGATGTGATGATGTTGCAGTTTGATGAGCCAAAGAGCAGTGATGCTCAAGTTTTCACTTCTGAATCAACAAAATCGGTTGGAAGTTGTGATGATGATGACTATGATATTTTGATACCAAACATGAGAGCAATGTCGGAGGATATTTTACTAGACTTCAATCACCTCAATGGTGGTAGATTATTCTCTTAG 1065 0.37 MANVDWDLFSIVRSCKTSTLTPPSSIFETSPHTPFYFDDFTLSHENNPIPNINTSINETNHYPTVLDFPIFVGQQQITPNDNNQMVFPKPAAYVEITTQHFDFAYNHPSVLHELQRERNQLPIQEPRTRFGIVPNTLSQHSKRKSWKRKNKNTKTLECHLSVEKIKEDPWTWRKYGEKIIKGSSHPRSYYKCSSFNDCPAKKLVEKSKNKDNTYVVTYKGQHNHKEPKCNDRSIIGTSRNNSSKRVLSTAKGVESSSTQSKVLYPENELTNKHFLVSQEDVPSSNVGNLSSSDVMMLQFDEPKSSDAQVFTSESTKSVGSCDDDDYDILIPNMRAMSEDILLDFNHLNGGRLFS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09809 354 MobiDBLite consensus disorder prediction 233 251 - -
Vifa1g09809 354 SUPERFAMILY WRKY DNA-binding domain 164 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09809 354 Pfam WRKY DNA -binding domain 167 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09809 354 ProSiteProfiles WRKY domain profile. 161 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09809 354 Gene3D WRKY domain 151 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09809 354 SMART WRKY_cls 166 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09809 354 MobiDBLite consensus disorder prediction 221 251 - -
Vifa1g09809 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 322 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09809 Vifa-Chr1 1594889263 1594890521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09809 144 242 WRKY Transcription Factor Family AT5G52830 47.475 5.50e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g09809 WRKY 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09809 - - psat:127093490 479.944