Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09805 ATGGGTCGTTCTCGTGGGAATTTTCATCATGCCGATGAAGATCCCAGCCAAAGATCAAGGAGAAAGAAGAATGCTTCTAGTGGGGATAATTCGGAATCCGGTGCTGCGGGTCAAGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCATTGCAATTACTGTAATAAAGATATTACAGGAAAGATTCGTATTAAGTGTGCCGTGTGCCCAGACTTTGATTTATGCATAGAATGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGGTTATGGACAATCTGTCTTTCCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATCTTGCTTCTAGAGGGAATTGAAATGTATGGTATGGGAAACTGGGCAGAAGTCGCTGAGCATGTTGGAACAAAGAACAAAGAAGCATGCATTGAACACTATAAGAATGTGTACCTAAACTCTCCGTACTTCCCTCTTCCGGACATGTCTCATGTTGTTGGGAAGAACAAAAAAGAACTACTCGCCATGGCGAAAGGGCAGGGTGATGACAAGAAAGGACTTCCGATGGGGGATCTTAGAATTAAGGAAGAATCAACCTTTTCTACGTCTAGAGTCAAAATGGAAGATTCCCATAAACATGGTTCCACTAGCTGTCTGGCTTCCAATTTGAATCCAGAGTTAGATTCTGGGCTCTCAGTCAGCACACAGGCTTCAGCTACTGTTAACCAGAGGGCATCTAACAAAGGTCGAGGAAAAGGTGGTCCTGGAATCGTTAAAATTGAAGATTCTCCAGATTTCGGAGGAAATAAACCAAATTCCTCAGGAAATGACGGCCCTTCTTTGGTTGAAATCAGTGGTTATAATCCGAAAAGACAGGAATTCGATCCTGAATATGATAATGATGCTGAACAACTGCTTGCTGAAATGGAGTTTAAGGACACTGACACTGAGGACGAGCGGGAGATCAAACTCCGCGTGTTGCGTATCTATTACAAAAGGCTTGATGAAAGAAAGCGCAGGAAGGAATTCATACTTGAAAGAAATTTGCTATATCCAAATCCAATTGAGAAGGATTTCACACCCGAGGAAAAGGCAATATGTCGGAAATATGACAAATTCATGCGCTTTCATACAAAGGAAGATCACAATGAATTACTTACAACCATTATCACTGAACACAGAACTCTTAAAAGAATTCAGGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCACTACAGCCGAAGCAGATAGATATCTGGCACATAAGAGAAGAAAGGAAGCTGACGAAAATGCTCGTAGGGCAAGAGAAAATGCTCACGTCAGCCTAAATAATCACGGCGTTCCAAATGCATTAATGTCTCCAGACTCTGCTGGTACAAGACCTGTCAATGAAATGGATCTAGCAGGATACTATGGAGCAGATTTACTTTCCGAACCTGAGAAACATCTTTGTTGTGAACTAAAGTTGCCTCCGGCCACATATCTAAAGATGCAACAGCATCTGTCTATGCAAATGATTGCCGGCAACGTGACTTCGAAATCCGATGCTCATCAAATGTTCAACATGGATGCCTTGAAAGTTGACAGGGTGTATGATATTCTCATTAAGAAGGGAATTGGTTCACCCTGA 1632 0.4289 MGRSRGNFHHADEDPSQRSRRKKNASSGDNSESGAAGQGASEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYKNVYLNSPYFPLPDMSHVVGKNKKELLAMAKGQGDDKKGLPMGDLRIKEESTFSTSRVKMEDSHKHGSTSCLASNLNPELDSGLSVSTQASATVNQRASNKGRGKGGPGIVKIEDSPDFGGNKPNSSGNDGPSLVEISGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEDEREIKLRVLRIYYKRLDERKRRKEFILERNLLYPNPIEKDFTPEEKAICRKYDKFMRFHTKEDHNELLTTIITEHRTLKRIQELKEARAAGCRTTAEADRYLAHKRRKEADENARRARENAHVSLNNHGVPNALMSPDSAGTRPVNEMDLAGYYGADLLSEPEKHLCCELKLPPATYLKMQQHLSMQMIAGNVTSKSDAHQMFNMDALKVDRVYDILIKKGIGSP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09805 543 CDD SANT 108 150 IPR001005 -
Vifa1g09805 543 SMART zz_5 44 89 IPR000433 GO:0008270
Vifa1g09805 543 Gene3D - 457 541 IPR036388 -
Vifa1g09805 543 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Vifa1g09805 543 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 538 - -
Vifa1g09805 543 MobiDBLite consensus disorder prediction 1 39 - -
Vifa1g09805 543 SMART sant 104 153 IPR001005 -
Vifa1g09805 543 CDD ZZ_ADA2 48 96 IPR041983 -
Vifa1g09805 543 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Vifa1g09805 543 MobiDBLite consensus disorder prediction 198 295 - -
Vifa1g09805 543 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Vifa1g09805 543 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Vifa1g09805 543 MobiDBLite consensus disorder prediction 214 247 - -
Vifa1g09805 543 MobiDBLite consensus disorder prediction 267 281 - -
Vifa1g09805 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Vifa1g09805 543 Gene3D - 102 153 - -
Vifa1g09805 543 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g09805 543 SUPERFAMILY RING/U-box 48 110 - -
Vifa1g09805 543 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Vifa1g09805 543 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Vifa1g09805 543 SUPERFAMILY Homeodomain-like 457 540 IPR009057 -
Vifa1g09805 543 PIRSF Txn_adaptor_ADA2 35 543 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vifa1g09805 543 MobiDBLite consensus disorder prediction 198 213 - -
Vifa1g09805 543 FunFam Transcriptional adapter 41 96 - -
Vifa1g09805 543 FunFam Transcriptional adapter 2 101 153 - -
Vifa1g09805 543 FunFam Transcriptional adapter 2 458 542 - -
Vifa1g09805 543 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Vifa1g09805 543 Gene3D - 40 96 IPR043145 -
Vifa1g09805 543 ProSiteProfiles SWIRM domain profile. 457 543 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09805 Vifa-Chr1 1593610935 1593615219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09805 1 541 EF-hand Containing Proteins AT3G07740 43.966 3.44e-152 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g09805 Myb_DNA-binding 7.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09805 K11314 - gmx:100815514 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09805 1 1593610935 1593615219 Vifa1g09805 1 1593610935 1593615219 ECH