Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09800 ATGGCTTCTTTGCATTCCAAAAACCTATGGATTCGGAAGCAACAATGTCCTTGTGGAGATTGGAAGTGTTACATTACACATGAAGGTGTTGCTAAGGAGGATTGTGCAGTACCAGAATCAGTGAAGCCAGATAAAAGATCATCTTGTAGAGCTATCATTACCCCTTATGTTGGAATGGTGTTTAAGACCGACGACGAAGCTTTTGAATATTACGGTAATTTCGCTAGGAAGAGTGGTTTCTCTATTAGGAAAGAAAGATCTAGAATTAGCCCTCAGTTGGGTATTTATAAGCGTGACTTTGTTTGTTACCGATCCGGGTTTGCACCGGTGAAGAAGAAGGCGAACGGTGAACATCATAGAGATAGGAAATCGGTGAGGTGTGGATGTGATGCGAAATTGTATTTGTCTAAGGAGGTTATGAATGGTGTTTCCCAATGGGTTGTTGTGCAGTTTAGTAATATACACAATCATGAGCTTTTGGAAGACGATCAAGTGCGTCTTTTACCTGCGTACCGGAAGATTCATGAGGCTGATCAAGAGCGGATATTGTTGCTTTCGAAAGCTGGGTTTCCGATTCATCGGATAGTGAAGATGCTTGAGCTGGAAAAAGGGATTCAAGGTGGGCATTTGCCGTTCTTGGAAAGGGATGTGAGGAACTTTGTACAAAATCGTAAGAAGGTTGTTCAAGAGAATGAGGCGCTGCTAAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGTGTGTAAAGCCGTGAAAGAAGCTGATGTTGAGTTTGTTTATGATTTTACAGTCGATAAGAATGACAAAGTTGAAAATATAGCTTGGTCGTATGGTGATTCTGTTAATGCGAATGCTTTGTTTGGTGATGTGATTTATTTTGACATCTCTTATCGATCCGTCGCTTACGGATTGCATTTTGGAGTGTGGTTTGGGATTGATAATTGTGGTAGAATAATTTTGTTCGGTTGTGTTTTACTCCAAGACGAAACACTGCAATCCTTCTCATGGGCATTACAGACTTTTCTCCGGTTCATGGGAGGAAGATGTCCACAAACAATTATATCTGATCTTGACTCTAGTCTTCGAGATGCAATTAGAAGCGAATTTCAAGGAACTAAACATGTAATTCCGCTGTGGAATATTTTGAACAAGAAGAATTTGAACATCAATGGAGCCAAATGA 1188 0.4024 MASLHSKNLWIRKQQCPCGDWKCYITHEGVAKEDCAVPESVKPDKRSSCRAIITPYVGMVFKTDDEAFEYYGNFARKSGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKANGEHHRDRKSVRCGCDAKLYLSKEVMNGVSQWVVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGHLPFLERDVRNFVQNRKKVVQENEALLSEKRENDVLELLEVCKAVKEADVEFVYDFTVDKNDKVENIAWSYGDSVNANALFGDVIYFDISYRSVAYGLHFGVWFGIDNCGRIILFGCVLLQDETLQSFSWALQTFLRFMGGRCPQTIISDLDSSLRDAIRSEFQGTKHVIPLWNILNKKNLNINGAK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09800 395 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 388 IPR031052 GO:0006355
Vifa1g09800 395 Pfam MULE transposase domain 292 385 IPR018289 -
Vifa1g09800 395 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09800 Vifa-Chr1 1591471598 1591472958 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g09800 MULE 3.3e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09800 - - aprc:113874854 676.011