Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09788 ATGGGGAATGTGAATGGCAGAGAAGAAGATTTCAACGGCACACTCTCGGAAGCTTCATCTGATGATGGAGAGAGAGAGGGAGGTTTTGACAGTGTCAGCGATTCCATCCCTAGAACTACTCAATCTCCGTTAATGTTCTCTCCTCAGGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAGGCTCCAACCTCTTCCTGGATGCAAACTACTTCAGGGTACGAGGATATGTTTGATGAAATTGGAATTCCGACAATGATTACTTGGAGTTATGGTGGTAAAGAGGTTTCCGTGGAGGGGTCATGGGATAATTGGAAATCCAGAATTCCCTTGCAGAGATCTGGAAAGGACTTCACTATAATGAAGGTGCTGCCATCTGGTGTGTACCAGTTTAGATTTATCGTGGATGGACGATGGAGGCACGCACCTGACTTGCCTTGGGAACAAGATGATGCTGCCAATACCTACAACATTCTCGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCACCAAAATCACCAGACTCTAGTTACAACAACTTACACCTAAGTTCCGAAGATTATGCTAAGGAGCCACCACTGGTTCCTCCATTCATGCAAATGACTCTTCTTGACGTTCCTTCAACAAATATGGAGTTTGAACCTCTCGTGTCCAGACCACAACATGTAATGCTCAATCATCTCTATATGCAGAAAGGAAAGAATAGCCCTTCAGTGGTTGCACTCGGGACAACTCATCGATTCGTAGCGAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGCGGTAA 816 0.4485 MGNVNGREEDFNGTLSEASSDDGEREGGFDSVSDSIPRTTQSPLMFSPQVPVVPLQRPDEMQAPTSSWMQTTSGYEDMFDEIGIPTMITWSYGGKEVSVEGSWDNWKSRIPLQRSGKDFTIMKVLPSGVYQFRFIVDGRWRHAPDLPWEQDDAANTYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLDVPSTNMEFEPLVSRPQHVMLNHLYMQKGKNSPSVVALGTTHRFVAKYVTVVLYKSLQR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09788 271 SUPERFAMILY E set domains 84 169 IPR014756 -
Vifa1g09788 271 CDD E_set_AMPKbeta_like_N 85 161 - -
Vifa1g09788 271 MobiDBLite consensus disorder prediction 33 47 - -
Vifa1g09788 271 SUPERFAMILY AMPKBI-like 166 268 IPR037256 -
Vifa1g09788 271 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 271 IPR043554 -
Vifa1g09788 271 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g09788 271 SMART AMPKBI_2 179 269 IPR006828 GO:0005515
Vifa1g09788 271 Gene3D - 172 269 - -
Vifa1g09788 271 Pfam Glycogen recognition site of AMP-activated protein kinase 84 163 IPR032640 -
Vifa1g09788 271 Gene3D Immunoglobulins 79 166 IPR013783 -
Vifa1g09788 271 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 197 267 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09788 Vifa-Chr1 1589708594 1589711011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09788 83 164 Protein tyrosine phosphatase (PTP) family AT3G01510 35.227 3.80e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09788 K07199 - gmx:100777497 456.832