Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09786 ATGGACCTCTTCGCCGCCGACCACGTCGCTCCATTTCCCGACACCGGCGACCTTCTCTTCGCAGCCGGCCTCCTCTCCAACCGCCACAATCCCCAAAAACTCCGCCCCATCAGGTCCGTCCCTCCTCCTCCTAGTTCCCTACTCAATGCTCAGTCCCCTTCCAACCTTCACCCTCCAGAACCTTCCACTCAGAAGAAGGACCCCACTGAATCCGGGTCGGGTAATTCCCCATTGCCTAATAAGCAGGAACCCGGTTCTTCTTTGGATGATGAAGATGATGTCGACGACGTAGAGAATTCGTCTGGAAGTACTAAAGATTTTGGCTCGAGAAAGAGAAGGAAAAAGGCGGCGAGAAAGCTTGAAAGTTTTGTAGAAAGTTTGGTTAAGAGGGTGATGGAGAAACAAGAACAGATGCATAAGGAATTGGTGGAAATGATAGAGAAGACGGAAAAAGAAAGAATGAAGAGAGAAGACGCATGGAGGCGGGAGGAGATGGAAAGATTTAAGAAAGAAGACGAAGCTAGAGCGCAAGAAAGGTCTCGTAATTTAGCCCTAATATCGTTCATTCAGAAGCTTTTGGGCCAGGAAATTCAAATTCCTCAACAAGCTATGAACTTATTGGGCCATGAAATTCAAATTTATCAACCAGGAGAAGGAAGCGGGAAAAAAGAAGAAGATAGAGTCGAGGTAAACAACAAGAGAGATTTCAATGGCGATATGAGCAATAATAGATGGCCAGATGTGGAAGTACAAGCACTCATAGTGGTAAGAACTGCGTTGGAACACAGGTTTGGTGGTGGTCTTACGGGAACGAAAGGATCAATATGGGAGGAGATATCTGAAGCGTTGCGCGGAAAGGGTTTCAATCGATCTGCGAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTATTACAAGAGGACAGTGGGGAGTGGCAAGAAGCGGCCTCTAAATAGTAAAACTTGCCCTTACTTTGATGAATTGGATAATCTGTATAGAAATGGGTCCTTCAACAGCCTTGGAAATGCATTGAGCAATACCAACAATGTTTCCATGAGTGAAGTAAAGGAGCAAGGTGAAATTTGA 1089 0.4564 MDLFAADHVAPFPDTGDLLFAAGLLSNRHNPQKLRPIRSVPPPPSSLLNAQSPSNLHPPEPSTQKKDPTESGSGNSPLPNKQEPGSSLDDEDDVDDVENSSGSTKDFGSRKRRKKAARKLESFVESLVKRVMEKQEQMHKELVEMIEKTEKERMKREDAWRREEMERFKKEDEARAQERSRNLALISFIQKLLGQEIQIPQQAMNLLGHEIQIYQPGEGSGKKEEDRVEVNNKRDFNGDMSNNRWPDVEVQALIVVRTALEHRFGGGLTGTKGSIWEEISEALRGKGFNRSAKKCKEKWENINKYYKRTVGSGKKRPLNSKTCPYFDELDNLYRNGSFNSLGNALSNTNNVSMSEVKEQGEI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09786 362 FunFam Trihelix transcription factor GT-2 245 308 - -
Vifa1g09786 362 ProSiteProfiles Myb-like domain profile. 237 303 IPR001005 -
Vifa1g09786 362 CDD GT1 243 309 - -
Vifa1g09786 362 Pfam Myb/SANT-like DNA-binding domain 243 332 IPR044822 -
Vifa1g09786 362 MobiDBLite consensus disorder prediction 49 83 - -
Vifa1g09786 362 Gene3D - 245 308 - -
Vifa1g09786 362 Coils Coil 132 152 - -
Vifa1g09786 362 MobiDBLite consensus disorder prediction 30 115 - -
Vifa1g09786 362 PANTHER FI21293P1 61 352 - -
Vifa1g09786 362 SMART sant 241 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09786 Vifa-Chr1 1587788651 1587790207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09786 111 337 Trihelix Transcription Factor Family AT5G47660 44.348 2.51e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g09786 Myb_DNA-bind_4 2.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09786 - - tpra:123899422 494.582