Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09776 ATGGGTAGTGCGGAGTTAAACTATCAATCCGCCATGAGGGGCCGTAACGAAGGGCCTTACTATTCAAATTATCATCCTCTTTTTAAAGAAATGGAAGATGCCGACTCCCTTGAGTTTCTGGGTTCGTCACCTTCAAACCTTACTTCTGGTGTATTGCAAGAGAAGGTTTTTCCTGGATCTGTGGATCATTTAACACCGGGGAAGAATCATACTCCATCATTGCATAATCTGTTTAACGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATTGATGGTACTCTTTCTTCAAAGGTTGCCATTCAATCAACCAGAGATATAGGTGTTCAGTTCAATGCTAGTGAGTTCAAAAAGTCTACAGAAGAAGTGAAAATCCTCTATTCTAACGAGGAAAGGCTTAATAGTAGTGATACTAAAAAATCTTCAAGAAAGAAACGGAAATCAGATCTGAGTGCACAGGAAGGCTCTTCAGCTGAAAATGAGGAGGGCGCAGATTCACGCTATCGGTTCTATGAAAGTGCGTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATAAATGAATCAAAAGCATTTGAACCAAATAATCCTTTCTGTCGAGTTGTGCGGCGACCCTCTTATTTATATAGGGGATGTATAATGTATCTGCCTTCCTCATTTGCAGAGAACAATTTGAACGAGGTTTCAGGATTCATTAAACTTCTGGGCCCAATCGGGAAAGAATTTCCTGTTCGCTGTCTTTATAGAGGTGGCCGAGCAAAGTTAAGCCAAGGATGGTATGAATTTACAGTAGACAACAATTTAGGGGAAGGCGACGTCTGTGTTTTTGAGCTGCTTAGAAGCCGAGAGGTAGTGCTGAAAGTTACTTTGTTTCATGTACGCGAGGATGAATCAGGGTTATTCGACCCTTCTACGCAGTTGAGCCAAAACGTGAGCCATGAAAAACTGCTGAACCCTCACTTGCAGCACCTTGTCAGCACCACCAAACCGGTTATAGCAGCGGGGAGAATTAACTCCTCCTGA 1038 0.4306 MGSAELNYQSAMRGRNEGPYYSNYHPLFKEMEDADSLEFLGSSPSNLTSGVLQEKVFPGSVDHLTPGKNHTPSLHNLFNGGSKLNRVNWGDIDGTLSSKVAIQSTRDIGVQFNASEFKKSTEEVKILYSNEERLNSSDTKKSSRKKRKSDLSAQEGSSAENEEGADSRYRFYESASARKRTVTAEERERAINESKAFEPNNPFCRVVRRPSYLYRGCIMYLPSSFAENNLNEVSGFIKLLGPIGKEFPVRCLYRGGRAKLSQGWYEFTVDNNLGEGDVCVFELLRSREVVLKVTLFHVREDESGLFDPSTQLSQNVSHEKLLNPHLQHLVSTTKPVIAAGRINSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09776 345 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 121 301 IPR044837 -
Vifa1g09776 345 Pfam B3 DNA binding domain 208 296 IPR003340 GO:0003677
Vifa1g09776 345 MobiDBLite consensus disorder prediction 133 153 - -
Vifa1g09776 345 Gene3D - 181 301 IPR015300 -
Vifa1g09776 345 ProSiteProfiles B3 DNA-binding domain profile. 204 299 IPR003340 GO:0003677
Vifa1g09776 345 SMART B3_2 204 299 IPR003340 GO:0003677
Vifa1g09776 345 SUPERFAMILY DNA-binding pseudobarrel domain 197 296 IPR015300 -
Vifa1g09776 345 CDD B3_DNA 203 296 IPR003340 GO:0003677
Vifa1g09776 345 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09776 Vifa-Chr1 1586300765 1586302197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09776 140 300 B3 DNA Binding Superfamily AT3G18990 67.081 1.82e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g09776 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09776 - - lja:Lj2g3v0044780.1 451.44