Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09763 ATGGACTCGAAATCTATTGCTAAAGCTCTCTCGAAACAACATCAGAAAACAGCTGAAGTGAAAGACCTCAAGTTCTCTTCACTGTCGCTTCAGAAGACCGGCAAACCTGAGCTAACTGCTACTGAAGATTTGTCTAAGCAGAATATTGGGGAGATTTATGAAAGCAAGAAGTTTGGTGTTTCATTTCAAAAGGGTTCGTCTGCTGATTCAGTGAGTAATAAATTTGGTTCTGGTTCTTCCTCATCTGCTCCTGGCAAAGCATCCGGAGAAGCGGTTCGTGCTGTTAGTGGTAACATAGGCTCACAGGAAAGCTCTATTGATCAAGAGAGAAAGACCTCAGAGTATGGAAGTGTGAAGAGCAGTTCTGTTTCCGCTAAAGCTAGCGATGGTGCCAGTAGTATTGCAAAGACAAGTGGTAGTGCTAAGATTAGTGATCGAGCTGATTTCGTTGACAGTGGTAAGAGCAGTATATGCAGAGGAAGTACAAGCAGTGATGTGAGTGACGAGAGTACTTGTAGTAGCTTTAGTAGCAGTGTAAACAAGCCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTTAGAACTAGAGATGGAGCATTGGGTTTAGGCCACTTTAGGCTTCTCAAGAGGTTGGGTTGTGGAGATATTGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTGATGGACAAAGGGTCGTTAGCCAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCACTTGACCACCCGTTTCTCCCAACTTTGTACACTCATTTTGAGACGGAGAAATTTTCGTGCTTGGTGATGGAATTCTGCCCGGGTGGTGACCTCCATACACTTAGACAGAAACAACCAGGGAAGCACTTTCCTGAGCAGGCTGTAAAATTTTATGTGGCAGAAGTCCTACTGGCGATGGAGTACCTCCACATGCTCGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTCAGGGATGATGGGCATATTATGCTCTCTGACTTTGACCTTTCCCTCCGATGTGCTGTTAGTCCAACCCTCGTTAAATCCTCGTCCATTGACTCGGAGCCTTTAAGAAGAAATACTGGTTACTGTGCTCAGCCTGCGTGTATCGAGCCGCCATCCTGCATTCAACCATCCTGTGTTGCTCCTACCTCATGTTTTTCACCCCGGCTCTTTTCTAGCAAATCAAAGAAAGACCGAAAGCCCAAAACTGAACTTGGCAATCAAGTAAGTCCTCTACCTGAGCTCATTGCAGAGCCCACTGATGCCCGGTCTATGTCCTTTGTCGGAACCCACGAATACCTTGCACCCGAGATAATAAAGGGTGAAGGTCACGGGAGTGCAGTTGACTGGTGGACTTATGGAATCTTTCTATACGAGTTATTGTTCGGCAAAACTCCGTTTAAGGGATCTGGAAACCGAGCCACGCTGTTTAACGTGGTAGGTCAGCCGCTGCGATTTCCTGAAGCGCCTGTCGTTAGCTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTCAAGGAACCTCAACACAGATTGGCGTATAAACGAGGCGCAACTGAGATTAAGCAGCATCCCTTTTTCGAAGGTGTGAATTGGGCGTTGATTCGATGTGCTACCCCGCCCGAGATTCCAAAGGCTGTTGAGTTTGAGAAGATACCTTCCCCGGCTGCCTCGTCTGGCGGTGAAAAAGCCGCCGTTAACCACATGTCAACAACAACAGGTGGTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1827 0.4625 MDSKSIAKALSKQHQKTAEVKDLKFSSLSLQKTGKPELTATEDLSKQNIGEIYESKKFGVSFQKGSSADSVSNKFGSGSSSSAPGKASGEAVRAVSGNIGSQESSIDQERKTSEYGSVKSSSVSAKASDGASSIAKTSGSAKISDRADFVDSGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSIDSEPLRRNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKDRKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPAASSGGEKAAVNHMSTTTGGNQKGSDNYLEFDFF 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09763 608 MobiDBLite consensus disorder prediction 151 178 - -
Vifa1g09763 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Vifa1g09763 608 FunFam serine/threonine-protein kinase D6PK-like 292 359 - -
Vifa1g09763 608 ProSiteProfiles Protein kinase domain profile. 208 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09763 608 SMART serkin_6 208 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09763 608 FunFam Serine/threonine-protein kinase AGC1-7 439 564 - -
Vifa1g09763 608 MobiDBLite consensus disorder prediction 63 122 - -
Vifa1g09763 608 Gene3D Transferase(Phosphotransferase) domain 1 292 359 - -
Vifa1g09763 608 MobiDBLite consensus disorder prediction 574 597 - -
Vifa1g09763 608 MobiDBLite consensus disorder prediction 155 178 - -
Vifa1g09763 608 Gene3D Phosphorylase Kinase; domain 1 206 291 - -
Vifa1g09763 608 Gene3D Transferase(Phosphotransferase) domain 1 440 564 - -
Vifa1g09763 608 FunFam Serine/threonine-protein kinase D6PK-like 206 291 - -
Vifa1g09763 608 Pfam Protein kinase domain 443 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09763 608 Pfam Protein kinase domain 209 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09763 608 CDD STKc_phototropin_like 207 564 - -
Vifa1g09763 608 MobiDBLite consensus disorder prediction 583 597 - -
Vifa1g09763 608 PANTHER FLIPPASE KINASE 1-RELATED 47 570 - -
Vifa1g09763 608 SUPERFAMILY Protein kinase-like (PK-like) 182 566 IPR011009 -
Vifa1g09763 608 MobiDBLite consensus disorder prediction 63 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09763 Vifa-Chr1 1582467684 1582470401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09763 52 608 AGC Kinase Gene Family AT5G47750 78.136 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g09763 Pkinase 2.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09763 K08286 - gmx:100798088 983.015