Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09749 ATGTATCCTAGATTGATACACCCCCATGATGGAATTGTTGGACAAGATGATCTGCAATCTGGTGTTGCTGCTGTGAATCATAAGGGTGATCCTTGTCTTGTTTTGACTGCTGATCCAAAGCCTCGTCTTCGGTGGACTCAAGACCTTCATGAACGGTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCCAGTAAAGCTACACCAAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTAACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGAAAAGATATAGGGGAGGGATGTAAAGATGGGATGACAGGTTCCTATCTTTTAGAAAGCCCTGGCACTGATAACTCATCTCCAAAGTTACCTACATCGGATACAAACGAGGGTTACGAAATCAAGGAGGCGTTAAGAGCACAGATGGAGGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGACGCAGAGCGAAGATACATGGCTATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATAGGCGCTTCTGCTATAGACACAGACAGCCAAAAGTTCCAAGGAACCGAAAATAAAACACCAAGAGGTCCATTGGTTGATGCTCTTGGCTTTTATTCCTTGCCTTCTACTGAGGCGGCCGGAGTGAATGTTCCGGAGGAAGAAATTCCTCCAACTCTCCCACCCCAAAGAGCCGATTGCTCAACCGAAAGTTGTTTAACATCGCACGAGAGCTCTGGAGGATTGACTCTAGAAGGATCTACAAGTGCGGGGAAAAGAAGAATGCTAGGCATGGAGTCAATGGCGACACCTTTGATTTGGAGTGAAGCAAAGATGAAAGCTCAAGCCATCAATATAGGTCAAGGTAATCATCATCTTGGAATAACTAGGTATGGCATGTAA 945 0.4455 MYPRLIHPHDGIVGQDDLQSGVAAVNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGASAIDTDSQKFQGTENKTPRGPLVDALGFYSLPSTEAAGVNVPEEEIPPTLPPQRADCSTESCLTSHESSGGLTLEGSTSAGKRRMLGMESMATPLIWSEAKMKAQAINIGQGNHHLGITRYGM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09749 314 FunFam Myb family transcription factor 39 97 - -
Vifa1g09749 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Vifa1g09749 314 MobiDBLite consensus disorder prediction 245 267 - -
Vifa1g09749 314 Pfam MYB-CC type transfactor, LHEQLE motif 138 183 IPR025756 -
Vifa1g09749 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Vifa1g09749 314 MobiDBLite consensus disorder prediction 116 132 - -
Vifa1g09749 314 Gene3D - 39 97 - -
Vifa1g09749 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 24 278 IPR044848 GO:0003700
Vifa1g09749 314 MobiDBLite consensus disorder prediction 239 269 - -
Vifa1g09749 314 MobiDBLite consensus disorder prediction 112 132 - -
Vifa1g09749 314 Pfam Myb-like DNA-binding domain 43 93 IPR001005 -
Vifa1g09749 314 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09749 Vifa-Chr1 1578523611 1578527370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09749 8 256 G2-like Transcription Factor Family AT3G24120 45.560 1.14e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09749 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09749 - - gmx:100782369 538.88