Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09748 ATGTATCCTAGATTGATACACCCCCATGATGGAATTGTTGGACAAGATGATCTGCAATCTGGTGTTGCTGCTGTGAATCATAAGGGTGATCCTTGTCTTGTTTTGACTGCTGATCCAAAGCCTCGTCTTCGGTGGACTCAAGACCTTCATGAACGGTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCCAGTAAAGCTACACCAAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTAACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGAAAAGATATAGGGGAGGGATGTAAAGATGGTTCCTATCTTTTAGAAAGCCCTGGCACTGATAACTCATCTCCAAAGTTACCTACATCGGATACAAACGAGGGTTACGAAATCAAGGAGGCGTTAAGAGCACAGATGGAGGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGACGCAGAGCGAAGATACATGGCTATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATAGGCGCTTCTGCTATAGACACAGACAGCCAAAAGTTCCAAGGAACCGAAAATAAAACACCAAGAGGTCCATTGGTTGATGCTCTTGGCTTTTATTCCTTGCCTTCTACTGAGGCGGCCGGAGTGAATGTTCCGGAGGAAGAAATTCCTCCAACTCTCCCACCCCAAAGAGCCGATTGCTCAACCGAAAGTTGTTTAACATCGCACGAGAGCTCTGGAGGATTGACTCTAGAAGGATCTACAAGTGCGGGGAAAAGAAGAATGCTAGGCATGGAGTCAATGGCGACACCTTTGATTTGGAGTGAAGCAAAGATGAAAGCTCAAGCCATCAATATAGGTCAAGGTAATCATCATCTTGGAATAACTAGGTATGGCATGTAA 936 0.4444 MYPRLIHPHDGIVGQDDLQSGVAAVNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGASAIDTDSQKFQGTENKTPRGPLVDALGFYSLPSTEAAGVNVPEEEIPPTLPPQRADCSTESCLTSHESSGGLTLEGSTSAGKRRMLGMESMATPLIWSEAKMKAQAINIGQGNHHLGITRYGM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09748 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 24 275 IPR044848 GO:0003700
Vifa1g09748 311 FunFam Myb family transcription factor 39 97 - -
Vifa1g09748 311 MobiDBLite consensus disorder prediction 236 267 - -
Vifa1g09748 311 MobiDBLite consensus disorder prediction 114 129 - -
Vifa1g09748 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Vifa1g09748 311 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Vifa1g09748 311 Pfam MYB-CC type transfactor, LHEQLE motif 135 180 IPR025756 -
Vifa1g09748 311 MobiDBLite consensus disorder prediction 107 130 - -
Vifa1g09748 311 MobiDBLite consensus disorder prediction 242 264 - -
Vifa1g09748 311 Gene3D - 39 97 - -
Vifa1g09748 311 Pfam Myb-like DNA-binding domain 43 93 IPR001005 -
Vifa1g09748 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09748 Vifa-Chr1 1578523611 1578527370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09748 8 253 G2-like Transcription Factor Family AT3G24120 47.104 2.69e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09748 Myb_DNA-binding 3.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09748 - - gmx:100782369 544.273