Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09747 ATGTATCATCCAAAGAATGTTCCTGATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGACCAGAACATAGATTGTGGTAGGAGCACAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCAAAACAACGTTTGCGCTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCCGATCGTGCCACACCCAAAGGGGTTCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCCGACTCTTCATCCGATGAAGGGAAAAAAGCCGACAAGAAAGAAACGGGGGACATGCTTTCCAATCTAGATGGTTCATCGGGAATGCAGATTAATGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGTCTACACGAACAATTAGAGGTGCAGAGACAGCTACAGTTAAGGATAGAAGCTCAGGGAAAATATTTGAAAAAGATAATCGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGAAGCACCCGGCTCTGGTATTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAACTCGACAATAAGACTGAACCAGCAACCCCCGACCCAGAAAAAGCTGCTAAAGATCATGCACCAGCAAAGAGTCTTTCAGTCGAATCATTTTCATCTCACCACGAACCGATGACACCAGATTCCGGTTGCCAAGTCGGTTCTCCTGCTGATAGTCCTAACGGTGAGAGATCAGCTAAAAAGCAACGAGTAAGTGTGGAAGGAGAGTATTCAAATCCAGACATGATGCTTCCACATCAGATACTGGAGTCAAGCATGCCGTCATACCAGCAACCAACCACTCTTTTCCTTACCCGAGATCACTTTGATTCTGCCTTAGGTATGTCTACAAGAAGTGGCGAGGAATTGGACAAGCTTGGTGGCAGGAATATGTGA 981 0.4546 MYHPKNVPDSSLIGSNSLVHDQNIDCGRSTMDPGSGGNSLANNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQINEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGSGIAAPTPGDMCQQELDNKTEPATPDPEKAAKDHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSPNGERSAKKQRVSVEGEYSNPDMMLPHQILESSMPSYQQPTTLFLTRDHFDSALGMSTRSGEELDKLGGRNM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09747 326 MobiDBLite consensus disorder prediction 104 122 - -
Vifa1g09747 326 Gene3D - 44 103 - -
Vifa1g09747 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vifa1g09747 326 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Vifa1g09747 326 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Vifa1g09747 326 MobiDBLite consensus disorder prediction 228 254 - -
Vifa1g09747 326 MobiDBLite consensus disorder prediction 104 128 - -
Vifa1g09747 326 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vifa1g09747 326 Coils Coil 135 155 - -
Vifa1g09747 326 MobiDBLite consensus disorder prediction 209 224 - -
Vifa1g09747 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Vifa1g09747 326 MobiDBLite consensus disorder prediction 184 275 - -
Vifa1g09747 326 FunFam Myb family transcription factor 44 102 - -
Vifa1g09747 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 31 298 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09747 Vifa-Chr1 1577909332 1577910950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09747 80 326 G2-like Transcription Factor Family AT2G01060 61.719 1.37e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09747 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09747 - - gmx:100786925 535.413