Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09746 ATGTATCATCCAAAGAATGTTCCTGATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGACCAGAACATAGATTGTGGTAGGAGCACAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCAAAACAACGTTTGCGCTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCCGATCGTGCCACACCCAAAGGGGTTCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCCGACTCTTCATCCGATGGGAAAAAAGCCGACAAGAAAGAAACGGGGGACATGCTTTCCAATCTAGATGGTTCATCGGGAATGCAGATTAATGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGTCTACACGAACAATTAGAGGTGCAGAGACAGCTACAGTTAAGGATAGAAGCTCAGGGAAAATATTTGAAAAAGATAATCGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGAAGCACCCGGCTCTGGTATTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAACTCGACAATAAGACTGAACCAGCAACCCCCGACCCAGAAAAAGCTGCTAAAGATCATGCACCAGCAAAGAGTCTTTCAGTCGAATCATTTTCATCTCACCACGAACCGATGACACCAGATTCCGGTTGCCAAGTCGGTTCTCCTGCTGATAGTCCTAACGGTGAGAGATCAGCTAAAAAGCAACGAGTAAGTGTGGAAGGAGAGTATTCAAATCCAGACATGATGCTTCCACATCAGATACTGGAGTCAAGCATGCCGTCATACCAGCAACCAACCACTCTTTTCCTTACCCGAGATCACTTTGATTCTGCCTTAGGTATGTCTACAAGAAGTGGCGAGGAATTGGACAAGCTTGGTGGCAGGAATATGTGA 978 0.455 MYHPKNVPDSSLIGSNSLVHDQNIDCGRSTMDPGSGGNSLANNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMLSNLDGSSGMQINEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGSGIAAPTPGDMCQQELDNKTEPATPDPEKAAKDHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSPNGERSAKKQRVSVEGEYSNPDMMLPHQILESSMPSYQQPTTLFLTRDHFDSALGMSTRSGEELDKLGGRNM 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09746 325 MobiDBLite consensus disorder prediction 105 121 - -
Vifa1g09746 325 MobiDBLite consensus disorder prediction 208 223 - -
Vifa1g09746 325 MobiDBLite consensus disorder prediction 104 127 - -
Vifa1g09746 325 MobiDBLite consensus disorder prediction 183 274 - -
Vifa1g09746 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 31 297 IPR044848 GO:0003700
Vifa1g09746 325 Gene3D - 44 103 - -
Vifa1g09746 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vifa1g09746 325 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Vifa1g09746 325 FunFam Myb family transcription factor 44 102 - -
Vifa1g09746 325 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Vifa1g09746 325 MobiDBLite consensus disorder prediction 227 253 - -
Vifa1g09746 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Vifa1g09746 325 Coils Coil 134 154 - -
Vifa1g09746 325 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09746 Vifa-Chr1 1577909332 1577910950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09746 80 325 G2-like Transcription Factor Family AT2G01060 61.569 6.34e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g09746 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09746 - - gmx:100786925 521.161