Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09742 ATGGCTCAATATCATTGGGATGGAATGGAGTATGTTGTAGATGATAATGAAATGACAGAGGTAGAAGATGATATGTATTTCCGTGGGAGAGCACTTGGTGAATCTGATTCTGATGATGACGACGATGATGAATATGACCTTTTGGAAAACAAAATAACAGATACAACTGCAGCAGAAGCTAGGAGGGGAAAGGATATCCAAGGTATACCTTGGGATAGACTGAGTATTAGTCGTGAGAAATATAGACAAACAAGACTAGAGCAGTACAAAAACTATGAAAATATACCACAATCAGGGGAACTATCAGAGAAGGAATGCAAAGTAACCCAAAAAGGGGGAATGTATTATGATTTCTGGCAAAACACGAGGTCTGTGAAGTCAACTATACTTCATTTCCAATTGAGGAACTTAGTTTGGTCGACATCTAAGCATGATGTATATCTTGTTGCACATTACTCAATTGTTCACTGGTCTTCATTAAGTTCTAAGAGATCTGAAGTCTTGAATGTATCCGGGCATGTTGCTCCATGTGAGAAACATCCGGGAAGCCTCTTGGAGGGTTTTACTCAGACACAAATTAGTACACTGGCTGTACGAGATAACTTGTTGATTGCTGGAGGTTTTCAAGGAGAGCTTATTTGCAAGTACTTAGATCGACCCGGGGTTAGCTTTTGTTCCCGAACTACATATGAGGACAATGCAATCACAAATGCTGTTGACATTTATGAGCATCCTAGTGGAGCTGTTCATTTCATGGCTTCAAACAATGACGGTGGAATCAGAGACTTTGATATGGAGAAATTTCAGCTTACGAAGCATTCATGTTTTCCTTGGCCAGTAAATCATACCTCATTGAGCCCTAATGGGAAACTACTCGCAATTGTTGGAGACAACCCAGAAGGGTTACTGGTGGATTCTCAAACTGGAAAGACTATTGCACCTCTAAGCGGGCACTTGGATTATTCATTTGCATCTGCATGGCATCCTGATGGTTGCATTTTTGCCACTGGAAACCAAGATAAAACATGTCGCATTTGGGATGTTCGGAATCTATCAAAGTCTGTTGCTGTTCTTAAGGGAAACCTCGGAGCTATACGCTCAATACGCTTCACATCTGATGGGCGGTACATGGCAATGGCTGAGCCAGCTGACTTCGTGCATGTCTATGATGCAAAGCAGGGATTTGAAAAGGAGCAACAAATAGATTTTTTTGGAGAGGTCTCAGGTGTATCTTTTAGCCCCGATACAGAATCACTTTTTATTGGTGTATGGGATCGTACTTATGGAAGTCTTCTTCAGTTCAATCGACGCAGAAACTATATGTATCTTGATTACCTGTAA 1341 0.4101 MAQYHWDGMEYVVDDNEMTEVEDDMYFRGRALGESDSDDDDDDEYDLLENKITDTTAAEARRGKDIQGIPWDRLSISREKYRQTRLEQYKNYENIPQSGELSEKECKVTQKGGMYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVAHYSIVHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCSRTTYEDNAITNAVDIYEHPSGAVHFMASNNDGGIRDFDMEKFQLTKHSCFPWPVNHTSLSPNGKLLAIVGDNPEGLLVDSQTGKTIAPLSGHLDYSFASAWHPDGCIFATGNQDKTCRIWDVRNLSKSVAVLKGNLGAIRSIRFTSDGRYMAMAEPADFVHVYDAKQGFEKEQQIDFFGEVSGVSFSPDTESLFIGVWDRTYGSLLQFNRRRNYMYLDYL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09742 446 FunFam WD-40 repeat family protein 228 444 - -
Vifa1g09742 446 Gene3D - 199 442 IPR015943 GO:0005515
Vifa1g09742 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 444 - -
Vifa1g09742 446 SMART WD40_4 394 435 IPR001680 GO:0005515
Vifa1g09742 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Vifa1g09742 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Vifa1g09742 446 SUPERFAMILY WD40 repeat-like 193 427 IPR036322 GO:0005515
Vifa1g09742 446 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Vifa1g09742 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Vifa1g09742 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09742 Vifa-Chr1 1576962527 1576966822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09742 303 427 Miscellaneous Gene Families AT5G08390 28.800 6.77e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09742 - - gmx:100788712 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09742 1 1576962527 1576966822 Vifa1g09742 1 1576962527 1576966822 ECH