Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09736 ATGGGCTCGGAGAATGAAATTTCTCCGGCCGATGCTCGTAAGGCTCCCGGCAAAGAACAACAAGCCGCCGGCGTCGGAATTCTTCTTCAGATCATGATGTTGGTCTTGTCGTTCGTCCTCGGTCACGTCCTCCGTCGCAAGAAGATTTACATCATTCCTGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGTGTTTTAGCTAACATTTCAGATACTGAAACTAATATCAGGGCTTGGTTCAATTTTCATGAGGAGTTTTTTTTCCTGTTCCTGTTACCACCGATCATATTTCAGTCTGGTTTCAGTCTTGCACCTAAACCGTTTTTCTCAAATTTTGGTGCAATTGTGACATTTGCTATATTTGGTACCTTTCTTGCTTCAGTTGTAACGGGTGTCTTGGTTTATCTTGGTGGGTTGGTCTTCCTTATGTATAAACTACCTTTTGTTGAGTGCCTGATGTTTGGCGCCCTAATATCAGCAACCGATCCTGTTACGGTTTTATCCATATTTCAGGAGCTGGGCACTGATGTCAATCTATATGCTTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATATCTCTGTACAGGACTATGTCATTGGTTAGAAATAACCCATCTGGACAGAATTTCTTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCTATGTCTGCAGGTGTTGGAGTTGGGTTTACATCTGCTTTGCTATTTAAGTATGCAGGCTTGGATGTTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTCTTCCCATATTTCTCGTACATGCTGGCTGAAGGCCTTGGTCTGTCTGGTATTGTATCAATATTATTCACAGGAATTGTCATGAAGCACTATGCGTTTTCAAATTTGTCACGAAGTTCTCAAAGATTCGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAAACATTTATATTTATATATATGGGCTTTGACATTGCTATGGAACAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGTAGTTGCAAGAGCTGCAAATGTCTTTTCTTGTGCTTACCTGGTCAATCTTGTCAGACCTGCACATCAACAGATACCTCCAAAATACCAAAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACCATCTTCACTGCAACTACAGCTATCGTTGTTTTGACGGTATTGCTGATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTGGATGTCGTAGGTGGTGAAGATCACAGTGATAACTCTTTGGCTTCAGTTGGTCCTATCACAAATTATGAGGAGGACAATGGTTATGTTGCTCCTTCATACGATGATGAATCATCGTCATCTGGGAACAAAATTAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCATCTTTTACGGCATTAGATAGAAACTATCTTACCCCATTCTTTACAAGCAATAATGGAGACGACGATGAAGAAGCCCAGCCTTTTACTTCCAGAAGTTCTTTTACTTCTTCAAGATCAGGATTTCATGGCCAGAGCCCATATTCATCATGA 1632 0.4112 MGSENEISPADARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLIVGVLANISDTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIFGTFLASVVTGVLVYLGGLVFLMYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRNNPSGQNFFMVVVRFLETFVGSMSAGVGVGFTSALLFKYAGLDVDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYAFSNLSRSSQRFVSAFFELISSLAETFIFIYMGFDIAMEQHSWSHVGFIFFSIIFIVVARAANVFSCAYLVNLVRPAHQQIPPKYQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVVGGEDHSDNSLASVGPITNYEEDNGYVAPSYDDESSSSGNKIKMKLKEFHKSAASFTALDRNYLTPFFTSNNGDDDEEAQPFTSRSSFTSSRSGFHGQSPYSS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09736 543 PANTHER SODIUM/HYDROGEN EXCHANGER 8 532 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vifa1g09736 543 MobiDBLite consensus disorder prediction 507 543 - -
Vifa1g09736 543 Pfam Sodium/hydrogen exchanger family 33 436 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa1g09736 543 NCBIfam sodium/hydrogen exchanger 3 31 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa1g09736 543 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa1g09736 543 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa1g09736 543 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa1g09736 543 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa1g09736 543 Gene3D - 150 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09736 Vifa-Chr1 1576449434 1576466950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09736 14 521 Antiporters AT5G55470 30.185 6.62e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09736 K14724 - gmx:100790830 884.404