Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09727 ATGGGTGAAAGAATTCTAGTGTTCCGACTTTTCCTTTTCTGTTATTTCTTTGTTGTTGTGGTAACAAAAACATCAAATGAAGATTACCTTGCGCTTTCGGCTATAAAGTATGAGTGGAAGAATACGCCGCCGAGTTGGGAGCGCTCGCAGGATCCTTGTGGTGGACAATGGGAGGGCATTGAGTGCTTCAATTCGCGCGTTATCACCATATCATTGTCAAGCATGGATTTGTCTGGCCAGCTTTCATCAGAAATTGGATCACTTTCTGAGTTGCAGATTTTGGTTCTGTCCTACAATAAGAATTTAACAGGACTGCTTCCGGCCGAAATTGGAAACTTGAAAAAACTGAGAAACTTACAGCTTATTAACTGCGGCTTCAGCGGTCCTATCCCAGATGCAATAGGAAATCTAAAACAGCTTGTATTCCTATCTTTGAATTCTAATAGATTTAGTGGAACAATTCCAGCTTCTATTGGTAATCTCTCAAGTATTAATTGGCTAGACTTAGCAGAAAACCAGCTTCAGGGTCCTATCCCAATATCTAGTGGAACTACTCCCGGTCTCGATATGCTGCACAAAACAAAACACTTTCATTTTGGGAAGAATAAGCTTTCAGGGACTATTCCAGCTCAACTTTTTAGTTCTGAAATGTCGTTGATACATGTGCTTTTTGAAAGCAACAATTTTAATGGCAGCATTCCATCTACACTTGGACTTGTGAAGACACTGGAAGTGGTGCGCTTGGATAACAATTCGTTAAATGGACCTGTGCCTCAAAACATTAACAATCTTACAAACGTTAGAGAATTGTTCCTGTCGTCGAATCACCTATCCGGTTCCCTGCCAAACCTTACTGGAATGAACGTCCTCAGTTACCTGGATATGAGTTATAACCAATTCGATCAATCAGACTTTCCATCATGGTTATCAACTCTTCAATCTCTAACAACAATAATGATGGAGAAAACACAACTTCAAGGACCTATTCCGGTTTCTTTGTTTAGCCTGGTACAGTTACAAACAGTGATGCTGAAAAACAACCAGCTGAATGGAACTTTAGATATTGGCACGACCATTAGTGACCAACTGGGAGTCATTGATTTGCAGACTAATTTTATTGAAAATTTTGAACCACAAATCAATGTCTCTAAAGTGGAAATAACACTTGTAGAAAATCCTTATTGCGATGAAGGACTCCCAGCAGCGAAACAAACCTACTGCTCCATTGCAAAAAACAGTGACTCGTACATAACGCCGCTAAATAACTGTGTGCCAGTTTCCTGCGACTCGAATCGGATACTAAGCCCGAATTGCAAATGTGCATACCCTTATACAGGAACTTTAACTCTTAGAGCTCCTTCTTTCTCTGACTTGGGAAACAAGACAGTGTTTGATATGCTAGGTTTTACTCTTATGGAGTCTTTTAGAAATCATGACAAACCTGTGGATTCAGTTTCTTTAAGCAATCCAAGGAAGAATGTGTATCAGTATCTTGATTTGAGTTTAGAAATATTTCCATCAGACCAAGATTCTTTTAATAGAACCGGTATTTCTAGCATAGGCTTTATGCTTAGCAACCAAACATACAAGCCCCGTGCTGACATTTTTGGACCATTTTATTTCATTGCCGATAAGTATGAACATTATCTGAATGATTCAGTAATAGAAGAAGGTCCTGTGAAATCAAGTAAATCCTCAAATATTGGCATCATCGCTGGAGCTGCTATTGGTGGTTGTGTCCTGGTTGTGTTATTTCTCCTTGCAGTTGTTTACGGTTTCCGCCAAAAGAACAAGGCAAAAAGAGAAGCTAAGAAAAGCAGTCTTTTTGAACAATGGGGTCCTGATGAGAGCAATAGTAGCATCCCACAGTTGAAAGGTGCGAGGCGCTTCAGTTTCGAAGAGATTCAGAACTGCACCAAAAAGTTTTCACAAATCAATTACATAGGATCTGGGGGATATGGGAAGGTTTATAGGGGAACTCTTCTCAACGGACAACTAATTGCAGTAAAACGAGCTCAAAAGGAATCAATCCAAGGAGGGTTGGAATTCAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTATTGGTTTCTGCTTCGAGCAAGGCGAACAAATATTGGTTTATGAGTATGTTGTAAATGGTACTCTGACAGATGCTCTTTCAGGGAAGTCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCCCTTGGTGCTGCTAGGGGGTTGGAGTATCTTCACGAACATGCTAATCCTCCTATCATACATAGAGACGTCAAATCGACAAACATTTTACTCGACGAGCGCTTGAATGCTAAAGTATCTGATTTCGGTCTCTCCAAGCCTTTGGGTGATGGTGCAAAAGGTTATATTACAACTCAAGTCAAAGGGACAATGGGCTACTTGGATCCAGAATATTACATGACACAACAATTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTTTTAATGTTAGAGTTGATAACAGCAAAAAGGCCAATAGAAAGAGGGAAATATATTGTGAAAGTTGTTAAGAATGCTATTGACAAGACAAAAGAGTTAAACGGTCTTACTGAAATCCTTGATCCTGTCATTGATTTTAAGGCATCATTGAACAGTTTTGAAAAATTTATAGATCTTACAATGAAATGTGTTGAAGAGTCAAGTTCAAACAGGCCTTCAATGAATTATGCACTGAAAGAAATTGAAAACATGTTGCTGTTGGCTGGCACAAACCCTAATGCTGATTCAGCATCTCCGTCATCTAGTTATAATGCTAGTGGAAATTCTATGCATCCTTATGAAAATGAGTACTTTGATTCAAGTGTGGTACTTCCACGCGCATAA 2874 0.3928 MGERILVFRLFLFCYFFVVVVTKTSNEDYLALSAIKYEWKNTPPSWERSQDPCGGQWEGIECFNSRVITISLSSMDLSGQLSSEIGSLSELQILVLSYNKNLTGLLPAEIGNLKKLRNLQLINCGFSGPIPDAIGNLKQLVFLSLNSNRFSGTIPASIGNLSSINWLDLAENQLQGPIPISSGTTPGLDMLHKTKHFHFGKNKLSGTIPAQLFSSEMSLIHVLFESNNFNGSIPSTLGLVKTLEVVRLDNNSLNGPVPQNINNLTNVRELFLSSNHLSGSLPNLTGMNVLSYLDMSYNQFDQSDFPSWLSTLQSLTTIMMEKTQLQGPIPVSLFSLVQLQTVMLKNNQLNGTLDIGTTISDQLGVIDLQTNFIENFEPQINVSKVEITLVENPYCDEGLPAAKQTYCSIAKNSDSYITPLNNCVPVSCDSNRILSPNCKCAYPYTGTLTLRAPSFSDLGNKTVFDMLGFTLMESFRNHDKPVDSVSLSNPRKNVYQYLDLSLEIFPSDQDSFNRTGISSIGFMLSNQTYKPRADIFGPFYFIADKYEHYLNDSVIEEGPVKSSKSSNIGIIAGAAIGGCVLVVLFLLAVVYGFRQKNKAKREAKKSSLFEQWGPDESNSSIPQLKGARRFSFEEIQNCTKKFSQINYIGSGGYGKVYRGTLLNGQLIAVKRAQKESIQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQILVYEYVVNGTLTDALSGKSGIRLDWIRRLKIALGAARGLEYLHEHANPPIIHRDVKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITAKRPIERGKYIVKVVKNAIDKTKELNGLTEILDPVIDFKASLNSFEKFIDLTMKCVEESSSNRPSMNYALKEIENMLLLAGTNPNADSASPSSSYNASGNSMHPYENEYFDSSVVLPRA 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09727 957 Gene3D Phosphorylase Kinase; domain 1 614 717 - -
Vifa1g09727 957 SUPERFAMILY L domain-like 35 400 - -
Vifa1g09727 957 ProSiteProfiles Protein kinase domain profile. 642 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09727 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 718 927 - -
Vifa1g09727 957 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Vifa1g09727 957 Pfam Protein kinase domain 643 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09727 957 FunFam Leucine-rich repeat protein kinase family protein 606 717 - -
Vifa1g09727 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Vifa1g09727 957 CDD STKc_IRAK 648 914 - -
Vifa1g09727 957 Gene3D Transferase(Phosphotransferase) domain 1 718 925 - -
Vifa1g09727 957 FunFam Leucine-rich repeat family protein 27 183 - -
Vifa1g09727 957 Gene3D Ribonuclease Inhibitor 184 393 IPR032675 -
Vifa1g09727 957 ProSitePatterns Protein kinases ATP-binding region signature. 648 670 IPR017441 GO:0005524
Vifa1g09727 957 SMART serkin_6 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09727 957 PANTHER RECEPTOR-LIKE PROTEIN 55 35 914 - -
Vifa1g09727 957 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
Vifa1g09727 957 SUPERFAMILY Protein kinase-like (PK-like) 628 943 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09727 Vifa-Chr1 1574337439 1574342612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09727 10 957 Receptor kinase-like Gene Family AT5G49760 54.927 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa1g09727 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09727 - - gmx:100782366 1378.23