Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09725 ATGGCTAACCAAAACAGAGAAGAAGTTGTGTGCGTAACCGGAGCAAACGGTTTCATCGGTTCATGGCTAGTTCAAACCCTATTACACAAACAAAACCCGCGCTACACAATCCACGCCACAATCTTCCCTGGTTCCGACTCTTCCCATCTCTTCACACTCCATCCCGAGGCACAATCCCGCATCACCATCTTCCCCGTCAACATCCTCGACTCCACCGCCGTCTCAAACGCCATCCAAAACTGCTCCGGCGTCTTCCACGTCGCATCCCCATGCACACTCGAAGACCCAACCGATCCACAAAAGGAACTTCTACAACCCGCTCTACTCGGAACCCTAAACGTTCTAGAAGCATCAAAGCGCGCGGGAGTGAAGCGCGTGGTTCTCACCTCCTCCATTTCAGCCATGGTGCCGAACCCTAACTGGCCGGAAAACAAACCGATTGACGAATCTTCGTGGACGGACGTTGAGTATTGTTCGTCGAGAGGGAAGTGGTATCCAGTATCGAAAACAAAAGCGGAGAAAGCCGCGTGGGAGTTTTGTGAGAGGAACGATGGTGACGGTGGTATCGACGTGGTGGCGATTCATCCGGCGACTTGTTTGGGGCCCTTGCTTCAGAAGGAGATGAATGCGAGTTCTGCTGTGTTGCAGAGGTTGATGATGGGGTTTGAGGATACGCAGGAGTGTTATTGGTTGGGTGCTGTTCATGTTAAAGATGTTGCTACTGCTCATGTTTTGGTTTATGAAACTCCAACTGCTGCTGGGAGATATCTTTGTACCAATGGTATCTATCAGTTTTCCAGTTTTGCTAAAATTGTGTCGGAATTGTACCCTCAATTTCCTATTCACAGTTTCCCAAATGAAACTCAACCTGGTTTGACACCATGTAAAGATGCAGCAAAGAGGCTAATAGACTTGGGCCTAGTCTTCACACCCATTCAAGATGCAATTAGAGAAGCCGCCGAAAGCCTCATGGCTAAAGGATTCCTGCAGAGAACACCCTCAGCCTCACAGAATTAA 1017 0.4926 MANQNREEVVCVTGANGFIGSWLVQTLLHKQNPRYTIHATIFPGSDSSHLFTLHPEAQSRITIFPVNILDSTAVSNAIQNCSGVFHVASPCTLEDPTDPQKELLQPALLGTLNVLEASKRAGVKRVVLTSSISAMVPNPNWPENKPIDESSWTDVEYCSSRGKWYPVSKTKAEKAAWEFCERNDGDGGIDVVAIHPATCLGPLLQKEMNASSAVLQRLMMGFEDTQECYWLGAVHVKDVATAHVLVYETPTAAGRYLCTNGIYQFSSFAKIVSELYPQFPIHSFPNETQPGLTPCKDAAKRLIDLGLVFTPIQDAIREAAESLMAKGFLQRTPSASQN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09725 338 CDD FR_SDR_e 10 307 - -
Vifa1g09725 338 FunFam Cinnamoyl-CoA reductase 1 3 336 - -
Vifa1g09725 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 318 - -
Vifa1g09725 338 Pfam NAD dependent epimerase/dehydratase family 10 252 IPR001509 -
Vifa1g09725 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 322 IPR036291 -
Vifa1g09725 338 Gene3D - 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09725 Vifa-Chr1 1574330225 1574334985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09725 7 329 Monolignol Biosynthesis Gene Families AT2G02400 63.158 4.87e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09725 - - gmx:100795399 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09725 1 1574330225 1574334985 Vifa1g09725 1 1574330225 1574334985 ECH