Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09714 ATGGAGGATCAAGCTTTTTTAGGTTATGAATCATTTGTTAGTGTTGGAAGAGATGAGGAAGAAGAAGATGAGTTTCGCAGTTGTTGTGAAGATGAAGAAGAAGAAGAAGAAAGAGAACAACAAGAAGAAGAAGAAGAATGGAAAGAAACTGAGGAAACAGTGGTGGAAGGGTTGAAGGAAGAGCTTGATGAATTTTCAGTAAAAATGTACTTTAAGGGTTTGTCAATACCTGGGGTTGAAAATTCAACTACAGGGCTTTCTGGAATTGGAGTGTACATGGAAAGATCATCAAATTTTTTGCCTATAAGGGTGCAAAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTGGAAGCTTTGCAGAACAAGATCCGTAGGGTTTATGCCTTCACAGATTCTGAAGTGTTGTATAAGACAACATTTGAGAAAAATTTAGACTTGCCGCTTTTGATGGCATTGAAAGAAAGGATTCTGGAACATGCAGATAATTTTGAAACTTTTGAACTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTAGCCAAAGTAGCTATGGGACTTGTCACTTTTCCAGTAAATGAAAAAACATCACTTGAGAATTGTTCTATTTGTTGCGATGACAAGCCAGTGCCACTGATGATTTCCTTGAAATGTTCACACACTTTCTGTTCACATTGCTTGAGGTCATATGCTGATGGTAAACTGCAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGTATCTCGGCACCTGAGTGCAAGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAAGCACTTTCAGAAGCAAATATTGGTCAGTCTGAAAGATTTTATTGTCCGTTTCCGAATTGCTCAGTTCTCCTCGATCCTTGCGAGTGTTTGTCGGCAATGGAAGGTTCATCTAGCCAGTCAGACAATTCGTGTATTGAGTGTCCTGTTTGTCAGAGGTTTATATGTGTGGATTGCGGTGTTCCATGGCATTCTTCCATGAGCTGTGAAGAATACCAGCATTTGCCAGAGGAGGAGAGAGATGCTTCTGACATTAGCCTGCACCGTCTTGCACAAAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAATTCTGCTATTCTTGTGGCGCGGAATACAGGAATGGCCAACAATCATGTCAATGTGCATTTTGGGATGAAGATAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAAACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGGTCACAACTCGCGCTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCCTCCTCAATGTACAGAATCCTTTGCAGACCCCTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAATTACTATGAAGATTACATGCAATAA 1572 0.4135 MEDQAFLGYESFVSVGRDEEEEDEFRSCCEDEEEEEEREQQEEEEEWKETEETVVEGLKEELDEFSVKMYFKGLSIPGVENSTTGLSGIGVYMERSSNFLPIRVQKRLDFYAEEPMVDYLALMDGLLEALQNKIRRVYAFTDSEVLYKTTFEKNLDLPLLMALKERILEHADNFETFELKLIPSIDLEQPLQLAKVAMGLVTFPVNEKTSLENCSICCDDKPVPLMISLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISAPECKSFLPFTSFESLEKALSEANIGQSERFYCPFPNCSVLLDPCECLSAMEGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQHLPEEERDASDISLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRNGQQSCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPPPQCTESFADPLKDLHQLPWLERFVSVISDNYYEDYMQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09714 523 Gene3D - 66 200 IPR036397 GO:0003676
Vifa1g09714 523 MobiDBLite consensus disorder prediction 1 52 - -
Vifa1g09714 523 FunFam RBR-type E3 ubiquitin transferase 67 201 - -
Vifa1g09714 523 SMART ibrneu5 281 353 IPR002867 GO:0008270
Vifa1g09714 523 SMART ibrneu5 363 422 IPR002867 GO:0008270
Vifa1g09714 523 ProSiteProfiles TRIAD supradomain profile. 210 428 IPR044066 -
Vifa1g09714 523 Gene3D - 351 467 - -
Vifa1g09714 523 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 465 IPR031127 GO:0004842|GO:0016567
Vifa1g09714 523 ProSiteProfiles Zinc finger RING-type profile. 214 258 IPR001841 -
Vifa1g09714 523 FunFam RBR-type E3 ubiquitin transferase 209 294 - -
Vifa1g09714 523 CDD Rcat_RBR_unk 379 415 - -
Vifa1g09714 523 FunFam RBR-type E3 ubiquitin transferase 351 466 - -
Vifa1g09714 523 Pfam IBR domain, a half RING-finger domain 287 353 IPR002867 GO:0008270
Vifa1g09714 523 Pfam IBR domain, a half RING-finger domain 372 422 IPR002867 GO:0008270
Vifa1g09714 523 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Vifa1g09714 523 SUPERFAMILY RING/U-box 366 430 - -
Vifa1g09714 523 Coils Coil 26 68 - -
Vifa1g09714 523 Pfam Reverse transcriptase-like 81 183 IPR002156 GO:0003676|GO:0004523
Vifa1g09714 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 293 IPR013083 -
Vifa1g09714 523 SUPERFAMILY RING/U-box 210 288 - -
Vifa1g09714 523 CDD BRcat_RBR_unk 295 356 - -
Vifa1g09714 523 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09714 Vifa-Chr1 1569934730 1569941832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09714 66 413 C3H Transcription Factor Family AT2G19610 25.967 6.01e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09714 - - tpra:123896818 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09714 1 1569934730 1569941832 Vifa1g09714 1 1569934730 1569941832 ECH