Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g09714 | ATGGAGGATCAAGCTTTTTTAGGTTATGAATCATTTGTTAGTGTTGGAAGAGATGAGGAAGAAGAAGATGAGTTTCGCAGTTGTTGTGAAGATGAAGAAGAAGAAGAAGAAAGAGAACAACAAGAAGAAGAAGAAGAATGGAAAGAAACTGAGGAAACAGTGGTGGAAGGGTTGAAGGAAGAGCTTGATGAATTTTCAGTAAAAATGTACTTTAAGGGTTTGTCAATACCTGGGGTTGAAAATTCAACTACAGGGCTTTCTGGAATTGGAGTGTACATGGAAAGATCATCAAATTTTTTGCCTATAAGGGTGCAAAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTGGAAGCTTTGCAGAACAAGATCCGTAGGGTTTATGCCTTCACAGATTCTGAAGTGTTGTATAAGACAACATTTGAGAAAAATTTAGACTTGCCGCTTTTGATGGCATTGAAAGAAAGGATTCTGGAACATGCAGATAATTTTGAAACTTTTGAACTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTAGCCAAAGTAGCTATGGGACTTGTCACTTTTCCAGTAAATGAAAAAACATCACTTGAGAATTGTTCTATTTGTTGCGATGACAAGCCAGTGCCACTGATGATTTCCTTGAAATGTTCACACACTTTCTGTTCACATTGCTTGAGGTCATATGCTGATGGTAAACTGCAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGTATCTCGGCACCTGAGTGCAAGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAAGCACTTTCAGAAGCAAATATTGGTCAGTCTGAAAGATTTTATTGTCCGTTTCCGAATTGCTCAGTTCTCCTCGATCCTTGCGAGTGTTTGTCGGCAATGGAAGGTTCATCTAGCCAGTCAGACAATTCGTGTATTGAGTGTCCTGTTTGTCAGAGGTTTATATGTGTGGATTGCGGTGTTCCATGGCATTCTTCCATGAGCTGTGAAGAATACCAGCATTTGCCAGAGGAGGAGAGAGATGCTTCTGACATTAGCCTGCACCGTCTTGCACAAAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAATTCTGCTATTCTTGTGGCGCGGAATACAGGAATGGCCAACAATCATGTCAATGTGCATTTTGGGATGAAGATAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAAACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGGTCACAACTCGCGCTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCCTCCTCAATGTACAGAATCCTTTGCAGACCCCTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAATTACTATGAAGATTACATGCAATAA | 1572 | 0.4135 | MEDQAFLGYESFVSVGRDEEEEDEFRSCCEDEEEEEEREQQEEEEEWKETEETVVEGLKEELDEFSVKMYFKGLSIPGVENSTTGLSGIGVYMERSSNFLPIRVQKRLDFYAEEPMVDYLALMDGLLEALQNKIRRVYAFTDSEVLYKTTFEKNLDLPLLMALKERILEHADNFETFELKLIPSIDLEQPLQLAKVAMGLVTFPVNEKTSLENCSICCDDKPVPLMISLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISAPECKSFLPFTSFESLEKALSEANIGQSERFYCPFPNCSVLLDPCECLSAMEGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQHLPEEERDASDISLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRNGQQSCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPPPQCTESFADPLKDLHQLPWLERFVSVISDNYYEDYMQ | 523 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g09714 | 523 | Gene3D | - | 66 | 200 | IPR036397 | GO:0003676 | |
Vifa1g09714 | 523 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Vifa1g09714 | 523 | FunFam | RBR-type E3 ubiquitin transferase | 67 | 201 | - | - | |
Vifa1g09714 | 523 | SMART | ibrneu5 | 281 | 353 | IPR002867 | GO:0008270 | |
Vifa1g09714 | 523 | SMART | ibrneu5 | 363 | 422 | IPR002867 | GO:0008270 | |
Vifa1g09714 | 523 | ProSiteProfiles | TRIAD supradomain profile. | 210 | 428 | IPR044066 | - | |
Vifa1g09714 | 523 | Gene3D | - | 351 | 467 | - | - | |
Vifa1g09714 | 523 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 56 | 465 | IPR031127 | GO:0004842|GO:0016567 | |
Vifa1g09714 | 523 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 258 | IPR001841 | - | |
Vifa1g09714 | 523 | FunFam | RBR-type E3 ubiquitin transferase | 209 | 294 | - | - | |
Vifa1g09714 | 523 | CDD | Rcat_RBR_unk | 379 | 415 | - | - | |
Vifa1g09714 | 523 | FunFam | RBR-type E3 ubiquitin transferase | 351 | 466 | - | - | |
Vifa1g09714 | 523 | Pfam | IBR domain, a half RING-finger domain | 287 | 353 | IPR002867 | GO:0008270 | |
Vifa1g09714 | 523 | Pfam | IBR domain, a half RING-finger domain | 372 | 422 | IPR002867 | GO:0008270 | |
Vifa1g09714 | 523 | ProSitePatterns | Zinc finger RING-type signature. | 231 | 240 | IPR017907 | - | |
Vifa1g09714 | 523 | SUPERFAMILY | RING/U-box | 366 | 430 | - | - | |
Vifa1g09714 | 523 | Coils | Coil | 26 | 68 | - | - | |
Vifa1g09714 | 523 | Pfam | Reverse transcriptase-like | 81 | 183 | IPR002156 | GO:0003676|GO:0004523 | |
Vifa1g09714 | 523 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 208 | 293 | IPR013083 | - | |
Vifa1g09714 | 523 | SUPERFAMILY | RING/U-box | 210 | 288 | - | - | |
Vifa1g09714 | 523 | CDD | BRcat_RBR_unk | 295 | 356 | - | - | |
Vifa1g09714 | 523 | MobiDBLite | consensus disorder prediction | 23 | 51 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g09714 | Vifa-Chr1 | 1569934730 | 1569941832 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g09714 | 66 | 413 | C3H Transcription Factor Family | AT2G19610 | 25.967 | 6.01e-29 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g09714 | - | - | tpra:123896818 | 913.679 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g09714 | 1 | 1569934730 | 1569941832 | Vifa1g09714 | 1 | 1569934730 | 1569941832 | ECH |