Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09711 ATGGAATCCGGTGACGGTCACGGCGGACGTGGAACTCATCAACCGTCCGACGAGGTGAGTCTACAACCAGAATGGAGACGCCGACGAACTGCCTCAACCGGAAGAGAACAACAAAACCTTAGTCTCCAACCAGAATGGAGGCGAGGTAGGTCAACAGCAACCACTCCACCTTCTTCCTCCCGTGCCGGCGATGAAGCTCAGAAGAAGGATCAGGAGCAGAAAAAGGAGGTTATCCTTCAACCAGAATGGAGACGATCAAGGTTCACTGCTACTACTACTACTGCCACTGCATATCCATGGAATCAAAACCAAAACTATGGTGTGAGAAAACCGTTAGGATCGAGTTCTAGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCTTGGCGAAATGCTCCACCGCCAGAAGATTATGTAGTTCCTAAACTGGAAAGTCTACAAATATCGAAAGATTTAGCTGGATCATCTCTTTCGCTTGAAAGAAAGGATAAAGCTTTCCCTATTCGGAGACCTGACCGCGGTGGCACGTTAGCGGTTCTTACGAGCAGACTTTGTGTTAATCATTTCCCTTTAAAGTTCAATCCGGAGAGTATAATATTTCATTACAATGTTAATGTGAAACCTAATTTTTCCTCGAAAGTTGGCCAGCCTCGGAAGTTGTCTAATAATGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCCGAGAGGTTTCCCTTGGACATGACTGCACATGACGGTGCCAAAAATATCTTTAGTGCGGTGCAGTTACCAGAAGAGACTGTTACTGTGGTGATCTTTGATGGAGAGGATGAAAAGATCACTTCATATAGTGTTACCATAACACTTCTTAATACACTCAGACTTCACAAGTTAATGGACTATCTTTGTGGGCGTTCGCTCTCTCTTCCTAGGGATATTTTACAAGGGATGGACGTGGTTGTAAAAGAGAATCCTGCTAGGCGAACAATTTCTGTGGGACGCCACTTCTATCCCACAAATCCTCCTTTAGTAATGAAGGAACTTCGCCCTGGAATAATTGCAGTCGGGGGATTTCAGCATAGTTTAAAACCTACTTCTCAGGGTCTGTCCTTGTGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTTAGTCTTGGATTTCTTGCATGAGCGAATCAATGACTTTAACTTGGGTGAATTTCAAAAATTCAGGAAACACGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGGAAATCCAAACAGAAATATATTATTGCCGGATTAACACCTACAGTTACAAGGCATGTCACTTTCCCCGTTGACATTGACTATACTAAGGGTTGGAGAATTGAAAAGGATGTTAATCTTCTTAGCTTTTTTAATGAGAAATATGACAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAGGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAAGAGCGTTTGGATGGTGCTTCAGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGAGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGTGGTGATATTATTCAAAACTTTGGAATGTCAGTCAATACGGCCATGACAACCATTCTAGGACGTGTAATTGGACCCCCGGAATTGAATTTGGGCGATCCAAATGGCAAGATTGTCAAGATAACAGTCGATCTAGATAAATGTCATTGGAACCTTGCCGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCGTTGGGCAATTCTTGATTTCACCAGTGTCGGGCCGTATAATAAAAAATTAAGAAGAAAGGAATTTGTTGAAAAACTTATGGGTAAATACAAAAAGTTAGGTATCTATATGCAGGAGCCCATTTGGCATGAAGAATCTTCAATGAAGATACTTGCGAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAACCAAGGTCGGCTACAATTTCTTCTTTGTGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCCAAGTTGGTATAATCACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGAATGACAAATTCTATACTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATTTTGAGCTCAATAATAGGCTCCCTTACTTTGAGGGGAACGAACATGTTATGTTTATAGGTGCTGATGTCAATCACCCTGGTTTACGGGATAACAGGAGTCCGTCAATTGCTGCTGTGGTTGCAACCATTAATTGGCCCGCTGCTAATCGCTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGGTTTGTGTTGAGCTTGTTGGCTGTTATTGGAGGATGAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTATCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGTGCATTCCAAAGATTAAATTATTTTCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGATGGTTGGAGGGATGGGTCTTCTGGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTATACACCCTTTTGAGTTTGATTTTTATCTCTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAGCACAAGTTTACCTCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTTACCTTCGCAAGGTGCACTAAACCTGTGTCTTTAGTCCCTCCCGTGTATTATGCTGATCTTGCTGCTTATAGAGGACGATTGTACCATGAAGCAAGGATTGTGATGCAATCTAAGAAGTCTAGAGGATCTTCATCTTCTAAAGATGCATTTGAACATGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3060 0.4137 MESGDGHGGRGTHQPSDEVSLQPEWRRRRTASTGREQQNLSLQPEWRRGRSTATTPPSSSRAGDEAQKKDQEQKKEVILQPEWRRSRFTATTTTATAYPWNQNQNYGVRKPLGSSSSGVQRSRNIDESWRNAPPPEDYVVPKLESLQISKDLAGSSLSLERKDKAFPIRRPDRGGTLAVLTSRLCVNHFPLKFNPESIIFHYNVNVKPNFSSKVGQPRKLSNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETVTVVIFDGEDEKITSYSVTITLLNTLRLHKLMDYLCGRSLSLPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMLVLDFLHERINDFNLGEFQKFRKHVEEVLIGLKVSVTHRKSKQKYIIAGLTPTVTRHVTFPVDIDYTKGWRIEKDVNLLSFFNEKYDKDIVYKDIPCLDLGKGNRKNYVPMEFCVLAEGQRYPKERLDGASAKTLEAMALAHPSERQSAIQKMVQSSDGPCGGDIIQNFGMSVNTAMTTILGRVIGPPELNLGDPNGKIVKITVDLDKCHWNLAGRSMVEGKPVERWAILDFTSVGPYNKKLRRKEFVEKLMGKYKKLGIYMQEPIWHEESSMKILASHDLLSELLEKINNICKYNQGRLQFLLCVMANKSPGYKYLKWISETQVGIITQCCLSYSANQGNDKFYTYLALKINAKLGGSNFELNNRLPYFEGNEHVMFIGADVNHPGLRDNRSPSIAAVVATINWPAANRYAARVCPQFNRSEKILNFGEVCVELVGCYWRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKSAFQRLNYFPTITLIVAQKRHQTRFFPDGWRDGSSGGNILPGTVIDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIVMQSKKSRGSSSSKDAFEHGFYRLHADLENIMFFI 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09711 1019 SMART Piwi_a_2 682 980 IPR003165 GO:0003676
Vifa1g09711 1019 CDD Piwi_ago-like 545 979 IPR045246 -
Vifa1g09711 1019 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 183 982 - -
Vifa1g09711 1019 MobiDBLite consensus disorder prediction 102 133 - -
Vifa1g09711 1019 Pfam N-terminal domain of argonaute 183 317 IPR032474 -
Vifa1g09711 1019 Gene3D - 751 1019 IPR036397 GO:0003676
Vifa1g09711 1019 Pfam PAZ domain 396 508 IPR003100 GO:0005515
Vifa1g09711 1019 Pfam Piwi domain 683 977 IPR003165 GO:0003676
Vifa1g09711 1019 SUPERFAMILY PAZ domain 375 536 IPR036085 GO:0005515
Vifa1g09711 1019 Gene3D paz domain 375 502 - -
Vifa1g09711 1019 MobiDBLite consensus disorder prediction 63 82 - -
Vifa1g09711 1019 ProSiteProfiles PAZ domain profile. 380 498 IPR003100 GO:0005515
Vifa1g09711 1019 MobiDBLite consensus disorder prediction 34 62 - -
Vifa1g09711 1019 ProSiteProfiles Piwi domain profile. 682 981 IPR003165 GO:0003676
Vifa1g09711 1019 MobiDBLite consensus disorder prediction 1 87 - -
Vifa1g09711 1019 Gene3D - 564 745 - -
Vifa1g09711 1019 CDD PAZ_argonaute_like 382 497 - -
Vifa1g09711 1019 SMART DUF1785_2 326 379 IPR014811 -
Vifa1g09711 1019 MobiDBLite consensus disorder prediction 102 127 - -
Vifa1g09711 1019 SUPERFAMILY Ribonuclease H-like 674 981 IPR012337 -
Vifa1g09711 1019 Pfam Argonaute linker 1 domain 327 378 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09711 Vifa-Chr1 1569515466 1569519682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09711 166 994 Eukaryotic Initiation Factors Gene Family AT1G48410 35.080 1.04e-140 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09711 K11593 - gmx:100783571 1518.83