Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09710 ATGGAATCCGGTGACGGTCACGGCGGACGTGGAACTCATCAACCGTCCGACGAGGTGAGTCTACAACCAGAATGGAGACGCCGACGAACTGCCTCAACCGGAAGAGAACAACAAAACCTTAGTCTCCAACCAGAATGGAGGCGAGGTAGGTCAACAGCAACCACTCCACCTTCTTCCTCCCGTGCCGGCGATGAAGCTCAGAAGAAGGATCAGGAGCAGAAAAAGGAGGTTATCCTTCAACCAGAATGGAGACGATCAAGGTTCACTGCTACTACTACTACTGCCACTGCATATCCATGGAATCAAAACCAAAACTATGGTGTGAGAAAACCGTTAGGATCGAGTTCTAGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCTTGGCGAAATGCTCCACCGCCAGATTATGTAGTTCCTAAACTGGAAAGTCTACAAATATCGAAAGATTTAGCTGGATCATCTCTTTCGCTTGAAAGAAAGGATAAAGCTTTCCCTATTCGGAGACCTGACCGCGGTGGCACGTTAGCGGTTCTTACGAGCAGACTTTGTGTTAATCATTTCCCTTTAAAGTTCAATCCGGAGAGTATAATATTTCATTACAATGTTAATGTGAAACCTAATTTTTCCTCGAAAGTTGGCCAGCCTCGGAAGTTGTCTAATAATGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCCGAGAGGTTTCCCTTGGACATGACTGCACATGACGGTGCCAAAAATATCTTTAGTGCGGTGCAGTTACCAGAAGAGACTGTTACTGTGGTGATCTTTGATGGAGAGGATGAAAAGATCACTTCATATAGTGTTACCATAACACTTCTTAATACACTCAGACTTCACAAGTTAATGGACTATCTTTGTGGGCGTTCGCTCTCTCTTCCTAGGGATATTTTACAAGGGATGGACGTGGTTGTAAAAGAGAATCCTGCTAGGCGAACAATTTCTGTGGGACGCCACTTCTATCCCACAAATCCTCCTTTAGTAATGAAGGAACTTCGCCCTGGAATAATTGCAGTCGGGGGATTTCAGCATAGTTTAAAACCTACTTCTCAGGGTCTGTCCTTGTGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTTAGTCTTGGATTTCTTGCATGAGCGAATCAATGACTTTAACTTGGGTGAATTTCAAAAATTCAGGAAACACGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGGAAATCCAAACAGAAATATATTATTGCCGGATTAACACCTACAGTTACAAGGCATGTCACTTTCCCCGTTGACATTGACTATACTAAGGGTTGGAGAATTGAAAAGGATGTTAATCTTCTTAGCTTTTTTAATGAGAAATATGACAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAGGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAAGAGCGTTTGGATGGTGCTTCAGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGAGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGTGGTGATATTATTCAAAACTTTGGAATGTCAGTCAATACGGCCATGACAACCATTCTAGGACGTGTAATTGGACCCCCGGAATTGAATTTGGGCGATCCAAATGGCAAGATTGTCAAGATAACAGTCGATCTAGATAAATGTCATTGGAACCTTGCCGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCGTTGGGCAATTCTTGATTTCACCAGTGTCGGGCCGTATAATAAAAAATTAAGAAGAAAGGAATTTGTTGAAAAACTTATGGGTAAATACAAAAAGTTAGGTATCTATATGCAGGAGCCCATTTGGCATGAAGAATCTTCAATGAAGATACTTGCGAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAACCAAGGTCGGCTACAATTTCTTCTTTGTGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCCAAGTTGGTATAATCACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGAATGACAAATTCTATACTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATTTTGAGCTCAATAATAGGCTCCCTTACTTTGAGGGGAACGAACATGTTATGTTTATAGGTGCTGATGTCAATCACCCTGGTTTACGGGATAACAGGAGTCCGTCAATTGCTGCTGTGGTTGCAACCATTAATTGGCCCGCTGCTAATCGCTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGGTTTGTGTTGAGCTTGTTGGCTGTTATTGGAGGATGAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTATCAGTTTGACATGGTTCTTAATGAAGAGCTACTAGATTTGAAGAGTGCATTCCAAAGATTAAATTATTTTCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGATGGTTGGAGGGATGGGTCTTCTGGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTATACACCCTTTTGAGTTTGATTTTTATCTCTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAGCACAAGTTTACCTCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTTACCTTCGCAAGGTGCACTAAACCTGTGTCTTTAGTCCCTCCCGTGTATTATGCTGATCTTGCTGCTTATAGAGGACGATTGTACCATGAAGCAAGGATTGTGATGCAATCTAAGAAGTCTAGAGGATCTTCATCTTCTAAAGATGCATTTGAACATGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3057 0.4138 MESGDGHGGRGTHQPSDEVSLQPEWRRRRTASTGREQQNLSLQPEWRRGRSTATTPPSSSRAGDEAQKKDQEQKKEVILQPEWRRSRFTATTTTATAYPWNQNQNYGVRKPLGSSSSGVQRSRNIDESWRNAPPPDYVVPKLESLQISKDLAGSSLSLERKDKAFPIRRPDRGGTLAVLTSRLCVNHFPLKFNPESIIFHYNVNVKPNFSSKVGQPRKLSNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETVTVVIFDGEDEKITSYSVTITLLNTLRLHKLMDYLCGRSLSLPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMLVLDFLHERINDFNLGEFQKFRKHVEEVLIGLKVSVTHRKSKQKYIIAGLTPTVTRHVTFPVDIDYTKGWRIEKDVNLLSFFNEKYDKDIVYKDIPCLDLGKGNRKNYVPMEFCVLAEGQRYPKERLDGASAKTLEAMALAHPSERQSAIQKMVQSSDGPCGGDIIQNFGMSVNTAMTTILGRVIGPPELNLGDPNGKIVKITVDLDKCHWNLAGRSMVEGKPVERWAILDFTSVGPYNKKLRRKEFVEKLMGKYKKLGIYMQEPIWHEESSMKILASHDLLSELLEKINNICKYNQGRLQFLLCVMANKSPGYKYLKWISETQVGIITQCCLSYSANQGNDKFYTYLALKINAKLGGSNFELNNRLPYFEGNEHVMFIGADVNHPGLRDNRSPSIAAVVATINWPAANRYAARVCPQFNRSEKILNFGEVCVELVGCYWRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKSAFQRLNYFPTITLIVAQKRHQTRFFPDGWRDGSSGGNILPGTVIDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIVMQSKKSRGSSSSKDAFEHGFYRLHADLENIMFFI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09710 1018 ProSiteProfiles Piwi domain profile. 681 980 IPR003165 GO:0003676
Vifa1g09710 1018 Pfam PAZ domain 395 507 IPR003100 GO:0005515
Vifa1g09710 1018 SUPERFAMILY PAZ domain 374 535 IPR036085 GO:0005515
Vifa1g09710 1018 MobiDBLite consensus disorder prediction 1 86 - -
Vifa1g09710 1018 SMART DUF1785_2 325 378 IPR014811 -
Vifa1g09710 1018 Gene3D - 750 1018 IPR036397 GO:0003676
Vifa1g09710 1018 SMART Piwi_a_2 681 979 IPR003165 GO:0003676
Vifa1g09710 1018 ProSiteProfiles PAZ domain profile. 379 497 IPR003100 GO:0005515
Vifa1g09710 1018 CDD Piwi_ago-like 544 978 IPR045246 -
Vifa1g09710 1018 Pfam N-terminal domain of argonaute 182 316 IPR032474 -
Vifa1g09710 1018 CDD PAZ_argonaute_like 381 496 - -
Vifa1g09710 1018 MobiDBLite consensus disorder prediction 63 82 - -
Vifa1g09710 1018 MobiDBLite consensus disorder prediction 34 62 - -
Vifa1g09710 1018 Gene3D paz domain 374 501 - -
Vifa1g09710 1018 Pfam Piwi domain 682 976 IPR003165 GO:0003676
Vifa1g09710 1018 Gene3D - 563 744 - -
Vifa1g09710 1018 SUPERFAMILY Ribonuclease H-like 673 980 IPR012337 -
Vifa1g09710 1018 MobiDBLite consensus disorder prediction 102 127 - -
Vifa1g09710 1018 Pfam Argonaute linker 1 domain 326 377 IPR014811 -
Vifa1g09710 1018 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 182 981 - -
Vifa1g09710 1018 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09710 Vifa-Chr1 1569515466 1569519682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09710 133 993 Eukaryotic Initiation Factors Gene Family AT1G48410 34.320 8.46e-142 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09710 K11593 - gmx:100783571 1516.9