Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09708 ATGGCTAATTCAGCTGAACCGTCATCATCTTTGAGTTTTACATCATCTTTATCGAATGCATCAATTAGTCACAACTCGAATGGCAATGATCATGCTCGTAACCTGGAGGTTATCAGTTTGAGTAAGCTTAGTTCTAATTTGGAACAGCTGTTGATTGATCCTGAATATGATTATGGTGATGCGGACATCATTGTTGAGGGAGTTTTGGTTAGAGTTCATCGGTGTATTTTAGGTTCTAGGAGTAAGTTTTTCCATGAGCTATTTAAGAGAGGTAAAGAAAAAGGATTGGCAAAGAGTGAAGGAAAATTGAAGTATTGCTTGAGTGATTTGTTGCCTTTTGGCAAAGTTGGACATGAAGCTTTTCTCATATTACTTAACTATGTATATACCGGTAAACTCAAACCCTCTCCAATGGAGGTTTCTACATGTGTTGATAATGTGTGTGCTCATGATGCATGTGGACCTGCAATTAACTTTGCTGTGGAGTTGATGTACGCCTCTTCCATTTTTCAAATGCGGGAGTTGGTTTCACTTTTTCAGCGACGGCTTCTTAACTTTGTAGGGAAGGCTCTTGTCGAAGACGTCATTTCAATCCTTATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTCGCTCAATGTGTTGACAGGGTGGCACGATCAGACCTTGACCAGATCTCAATTGAGAAAGCGCTTCCTCACGAGCTCTCCGAAAAAGTTAAATTGTTCCGCCGTGATCTTCAGAAGGATGGTGAAGACGATGCTCCCGTAGTGGACGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGACGACGTCGAGCTTGTTAAACTTCTTTTGAATGAGTCAGACATTTCTTTAGATGAAGCCGGTGCTCTCCACTATGCAGCAGCCTACTGTGACCCTAAGGTTGTTCCCGAAGTGCTTGGATTAGGTCTAGCTAATGTCAATCTTCGAAATTCTCGAGGGTACACAGTGCTTCACGTTGCTGCCATGCGTAAGGAGCCTTCCATTATAGTATCACTTCTTACTAAAGGGGCTTGCGTGTCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGACCGAAGGATTATCTCACAAAAACAGAACAAGGGAAAGAAACAAACAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATACCTCTGTGTCTTCCCAAACAATGGCTGATGATCTCCACATGAAGCTTCTGTACCTTGAGAACCGCGTGGCATTTGCAAGACTGTTCTTCCCCTTGGAAGCCAAACTAGCCATGGACATTGCTCGTGCAGAGACAACATCCGAGTTTGCTGGTCTTTCGGCGGGAAAAGGTTCAAATGGAAACTTAAGGGAGGTTGACCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTATTTCTAGGATGGAAGCACTAATGAAAACAGTGGAAATGGGGCGGCGCTACTTTCCTCATTGCTCAGAAGTGCTCGATAAATTCATGGAGGATGACTTACCTGATCTGTTTTACCTTGAGAAGGGCACTCAAGAAGAGCAAAGAATCAAGAGGACGCGATTCGTGGAGCTTAAAGATGATGTCAACAACGCTTTTAGCAAGGACAAGGCTGAGTTTAGTCGCTCCGGGATTTCATCTTCATCATCCTCATCATCTCTTAGAGATTCTGTATATTACAAGGCTAGAAAAATATGA 1755 0.4268 MANSAEPSSSLSFTSSLSNASISHNSNGNDHARNLEVISLSKLSSNLEQLLIDPEYDYGDADIIVEGVLVRVHRCILGSRSKFFHELFKRGKEKGLAKSEGKLKYCLSDLLPFGKVGHEAFLILLNYVYTGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQMRELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKALPHELSEKVKLFRRDLQKDGEDDAPVVDALSLKRITRIHKALDSDDVELVKLLLNESDISLDEAGALHYAAAYCDPKVVPEVLGLGLANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTKGACVSDLTFDGQSAVSICRRLTRPKDYLTKTEQGKETNKDRICIDVLEREMRRNPLAGDTSVSSQTMADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSAGKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFVELKDDVNNAFSKDKAEFSRSGISSSSSSSSLRDSVYYKARKI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09708 584 Pfam Ankyrin repeat 328 355 IPR002110 GO:0005515
Vifa1g09708 584 FunFam regulatory protein NPR3-like 261 401 - -
Vifa1g09708 584 SUPERFAMILY Ankyrin repeat 259 370 IPR036770 -
Vifa1g09708 584 ProSiteProfiles BTB domain profile. 59 137 IPR000210 GO:0005515
Vifa1g09708 584 ProSiteProfiles Ankyrin repeat profile. 327 352 IPR002110 GO:0005515
Vifa1g09708 584 Gene3D - 261 401 IPR036770 -
Vifa1g09708 584 SMART BTB_4 59 187 IPR000210 GO:0005515
Vifa1g09708 584 Pfam BTB/POZ domain 57 143 IPR000210 GO:0005515
Vifa1g09708 584 SUPERFAMILY POZ domain 44 185 IPR011333 -
Vifa1g09708 584 SMART ANK_2a 264 292 IPR002110 GO:0005515
Vifa1g09708 584 SMART ANK_2a 327 356 IPR002110 GO:0005515
Vifa1g09708 584 SMART ANK_2a 293 323 IPR002110 GO:0005515
Vifa1g09708 584 Pfam Domain of unknown function (DUF3420) 222 270 IPR024228 -
Vifa1g09708 584 CDD BTB_POZ_NPR_plant 42 187 - -
Vifa1g09708 584 Gene3D Potassium Channel Kv1.1; Chain A 24 219 IPR011333 -
Vifa1g09708 584 Pfam NPR1/NIM1 like defence protein C terminal 369 571 IPR021094 -
Vifa1g09708 584 PANTHER REGULATORY PROTEIN NPR3 15 574 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vifa1g09708 584 ProSiteProfiles Ankyrin repeat region circular profile. 327 352 - -
Vifa1g09708 584 FunFam Regulatory protein NPR3 33 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09708 Vifa-Chr1 1568508020 1568510874 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa1g09708 NPR1_like_C 1.3e-95 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09708 K14508 - gmx:100217338 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09708 1 1568508020 1568510874 Vifa1g09708 1 1568508020 1568510874 ECH