Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09705 ATGCTATCCCTCAATGTTTTTCCATCATCATCCTCTGTCCCTTTCACAAAACCAAATCACCATTCTTCCATCAATGCATCTCACACCCTCAAACCAAATCTTCTCAACCGGTTTCACCATGAACCACATCTCAAAAAATCCAATCTTTCTCTCACACCCATGTCTCAGATCCATCGTTCAACCACAAAGTTATCATCTTTTAACGGATTCTTCTCATACCCATTTGAGTTTTCACCCTTTTCTCCAAAACCCAGAAACCAATTTTTGAAAGCTGTATCTGATGAAGGTGAAGGTGAAGTTTCACCTCCAAGTACTCCAAAACCTAAGAATCTCAAGAAACTTGCTTTGGTATTTGGGTTTTGGTACTTCCAAAACATTGTTTTCAACATCTACAACAAGAAAGTGTTGAACATTTTCTCTTTCCCATGGCTTCTTGCTTCTTTTCAGCTCTTTGTTGGTTCAATCTGGATGCTTGTTCTCTGGTCTCTAAAGCTTCAACCTTGTCCAAAAATCTCAAAACCCTTCATTTTTGCACTACTTGGACCCGCTTTGTTTCATACAATAGGTCACATTTCAGCTTGTGTTTCATTCTCTAAGGTTGCTGTTTCTTTCACACATGTTATCAAGTCTGCAGAACCTGTTTTCTCTGTGATATTCTCTTCTGTTATAGGTGATAGGTATCCTATTCAGGTTTGGCTTTCAATTTTACCTATTGTTCTTGGTTGTTCTTTAGCTGCTGTAACTGAGGTTTCTTTCAATATTCAAGGATTGTGGTGTGCTCTTATTAGCAATGTTGGTTTTGTGTTGAGGAACATTTATTCCAAAAAGAGTTTACAGAATTTCAAAGAAGTTGATGGATTGAACTTGTATGGTTGGATTACTATACTTTCGTTTTTGTATCTTTTTCCGGTAGCGATTTTCGTAGAAGGGTCGCAATGGATTCCGGGGTATTATAAAGCAATTGAAGCTATTGGAAAGCCTTCAACTTTGTATGTTTGGGTTTTGGTTTCTGGTGTTTTCTATCATCTGTATAATCAATCATCTTACCAAGCATTGGATGAGATTAGTCCATTGACTTTCTCGGTCGGAAATACAATGAAGAGAGTGGTGGTTATTGTGTCTTCGGTTTTGGTGTTCAGGAATCCGGTTCGACCACTTAATGGTCTTGGATCCGCCATTGCGATTCTCGGGACTTTTCTGTACTCGCAAGCTTCTGCTGCAAAGAAAGCAAAGAAAATTGAAGGTGAAAAGAGTAGTTAG 1260 0.3849 MLSLNVFPSSSSVPFTKPNHHSSINASHTLKPNLLNRFHHEPHLKKSNLSLTPMSQIHRSTTKLSSFNGFFSYPFEFSPFSPKPRNQFLKAVSDEGEGEVSPPSTPKPKNLKKLALVFGFWYFQNIVFNIYNKKVLNIFSFPWLLASFQLFVGSIWMLVLWSLKLQPCPKISKPFIFALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSVIGDRYPIQVWLSILPIVLGCSLAAVTEVSFNIQGLWCALISNVGFVLRNIYSKKSLQNFKEVDGLNLYGWITILSFLYLFPVAIFVEGSQWIPGYYKAIEAIGKPSTLYVWVLVSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSSVLVFRNPVRPLNGLGSAIAILGTFLYSQASAAKKAKKIEGEKSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09705 419 PANTHER SOLUTE CARRIER FAMILY 35 113 408 - -
Vifa1g09705 419 Pfam Triose-phosphate Transporter family 113 402 IPR004853 -
Vifa1g09705 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 114 412 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vifa1g09705 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09705 Vifa-Chr1 1567178779 1567180038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09705 23 417 Antiporters AT5G17630 68.039 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09705 K15283 - gmx:100101869 655.21