Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09695 ATGGAGGATCCCGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGTCTCGACGCTCCTCCCTCCGCCGCCACCGCATCCGCCTCCGTTGCCGCCGCACCTTCCGGTCCTATCGTCCAACCCAATTCTTACTTACCACCTTCCGCGGCTTCCAATGGCGCCGCCGCTCCTCCCGTTGCTGAGCATGTTTCAGGTAACGTTCCTGGACGACGGAGCTTCCGGCAAACTGTTTGTAGGCACTGGCTTCGGAGTTTGTGTATGAAAGGGGATGCGTGTGGGTTTTTGCATCAGTATGATAAGGCTCGGATGCCGGTGTGTAGGTTTTTTAGATTGTATGGAGAGTGTCGGGAGCAGGATTGTGTTTATAAGCATACCAATGAAGATATCAAGGAGTGTAACATGTACAAGCTAGGATTTTGTCCTAATGGACCTGATTGTCGATACAGGCATGCAAAATCTTCTGGTCCTCCACCTCCAATTGAAGAGGTCCTTCAGAAGATCCAACATTTGTATTCTTACAATTATAACAATTCTCATAAATTTGGCCAACAAAGGGGTTCTAGCTATACTCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATCAATTCTGCAAACCAAGGTGTGGTTGGAAAAGCATTAGCTGCAGAGTCAGGAAATGTCCTGCAGCAGCAACAAGTTCAACAGCCTCAGCAGCAAGTCAGCCAAAACCAATCGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATCGAACATCAACTCCTTTACCTCAGGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGAAGCAATGAATCAAAACTAAATGAAGCATTTGACTCTGTAGAAAATGTGATATTGGTTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACTTCCAGAATTGGTGGTTCTGTTCCTGGGGGGAACTGGAAATATGCTCATGGAACGGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGACATTTGAGAAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAACAGTTGGCATCCTTGCTTTATGTTGAACCAGATAGCGAACTTATGGCTATCTCGGTTGCAGCTGAGTCTAAACGAGAAGAAGAGAAAGCGAAGGGGGTGAATCCAGAAAATGAAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTAATGGTGTAGGACCAGTTGTTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCCCCTCACATGCATCTCGGACGCGGAGCCAGACCCATGCCTGGAATGCAAGGTTTTAACCCTATGATGGGTGATGGATTACCCTACGGGCCTCCTGGACCTGATGGTTTTGGTATGCCGGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGCCCCCCAGCTGCCATGATGTTCCGAGGGCGACCCTCACAACCTGGGATGTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCATGGACGTGGTCCCTTTATGGGGGGAATGGGAGTTCCAGGTCCAAACCCTCCAAGAGGTGGTAGGCCAGTCAATATGCCTCCGATGTTTCCACCTCCTCCTCCTCCTCCACCACAAAATATGAACCGCATTGCAAAGAGAGATCAAAGAACAAGTGATCGAAATGATAGGTACAGTTCAGGACCAGAGCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCGGATGATGACATGCACTATCAGCAAGGATACAAGTCACAGCAGGATGACAAGAATGACGACAGCGAAAGCGAAGACGAGGCACCTAGGCGGTCAAGACATGGTGAGGGTAAAAAAAGAAAAGGCGAAGCTTAG 2055 0.474 MEDPEGVLSFDFEGGLDAPPSAATASASVAAAPSGPIVQPNSYLPPSAASNGAAAPPVAEHVSGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSSGPPPPIEEVLQKIQHLYSYNYNNSHKFGQQRGSSYTQQVEKSQFPQGINSANQGVVGKALAAESGNVLQQQQVQQPQQQVSQNQSQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVPGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYVEPDSELMAISVAAESKREEEKAKGVNPENEGENPDIVPFEDNEEEEEEESDEEEESFGNGVGPVVQGRGRGRGMMWPPHMHLGRGARPMPGMQGFNPMMGDGLPYGPPGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNHGRGPFMGGMGVPGPNPPRGGRPVNMPPMFPPPPPPPPQNMNRIAKRDQRTSDRNDRYSSGPEQGKSQDMLSQSGGPDDDMHYQQGYKSQQDDKNDDSESEDEAPRRSRHGEGKKRKGEA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09695 684 SUPERFAMILY CCCH zinc finger 71 102 IPR036855 GO:0046872
Vifa1g09695 684 MobiDBLite consensus disorder prediction 572 684 - -
Vifa1g09695 684 MobiDBLite consensus disorder prediction 432 454 - -
Vifa1g09695 684 Gene3D ph1033 like domains 239 399 - -
Vifa1g09695 684 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Vifa1g09695 684 MobiDBLite consensus disorder prediction 411 471 - -
Vifa1g09695 684 CDD YTH 262 396 IPR007275 GO:0003723
Vifa1g09695 684 MobiDBLite consensus disorder prediction 649 684 - -
Vifa1g09695 684 MobiDBLite consensus disorder prediction 411 426 - -
Vifa1g09695 684 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Vifa1g09695 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 30 676 IPR045168 -
Vifa1g09695 684 MobiDBLite consensus disorder prediction 610 624 - -
Vifa1g09695 684 MobiDBLite consensus disorder prediction 223 256 - -
Vifa1g09695 684 MobiDBLite consensus disorder prediction 580 605 - -
Vifa1g09695 684 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 66 127 - -
Vifa1g09695 684 Gene3D - 65 129 - -
Vifa1g09695 684 ProSiteProfiles YTH domain profile. 261 396 IPR007275 GO:0003723
Vifa1g09695 684 Pfam YT521-B-like domain 261 395 IPR007275 GO:0003723
Vifa1g09695 684 SMART c3hfinal6 127 151 IPR000571 GO:0046872
Vifa1g09695 684 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Vifa1g09695 684 SMART c3hfinal6 71 97 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g09695 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09695 K14404 - gmx:100802826 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09695 1 1563148578 1563164426 Vifa1g09695 1 1563148578 1563164426 ECH