Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09694 ATGTTTCATTACAGTCGCAGAGCATTTCTCGCATTCACAAAACCCTTCTCATCATCATCCCAAAACCCCTCTTTCACACTCAACTACCTCATTCAAAACCTCGCTTTCTCTCCCGAAACCGCCTCCAAAATCTCCACCAAACTCCATCTCCACAACTCACAAAAACCCGATTCAGTCCTCGCCTTTTTCAAATCCCACGGCTTCTCAAATTCCCACCTTTCCACTATCATCAAAACCTGCCCCATTCTCCTTACTTACGACCCCGACAAAACCATTCTCCCCAAACTCAATTTCCTTCGACAAAAGGGCGCTTCCACTTCCGATCTCATCGACATCATCACCAAAAATCCAAGGTTCTTATATCTCAGCTTGCAAAATTCCATCATCCCATATTATGATTTAGTCAAAAGGTTCCTACTTTCCGATGAATCCACCCTCGCATCTCTTAAATCCCGCGTTTGCGTCATTTATTCCAAAACCCCATCTCAGAATATTCAATTCCTCATTCAAAACGGGGTTCCTGAGTCTAAAGTTGCTATTTTGTATCGAAATTGGAATATTGTACTCACTCAGAATCCTCCCGTATTTGAGAAGGTAGTGATGGAGCTAATTCAATTGGGATTCAACCCCAAAACTACTTTTTTCATTGTGGCATTGCGTGCTAAGATTATGAAACCCATTTGGGAAACCAAGATTGATGTCTATAAGAAATGGGGTTGGTCTGAGCAAGATATTGTGGCCGCATTTTTGAGGCATCCATGGTGTATGATGGCATCTGTGGATAAAATTGAGGCAGTAATGAAGTTTTTTGTTGATCACATTGGTTGGGACTCGCTTGCGCTTGCGAAACGTCCAATACTTATTATGATGAGTTTGGAGAAAAGGGTTATTCCTCGGACTTTTGTCTTGAAATATCTTGAATCCAAAGGTTTGGCTAAGGATAAATGGATTACACCTTTCATGGTTTCTGAGGATGTATTTTTGAAGAAATTTGTGAATTGTTTTGAGGAAGAAGCTTCTTATTTGTTGAAGCTGTATGAGGAGAAAAAAGATGTTTCACATAATGTTTGA 1071 0.4052 MFHYSRRAFLAFTKPFSSSSQNPSFTLNYLIQNLAFSPETASKISTKLHLHNSQKPDSVLAFFKSHGFSNSHLSTIIKTCPILLTYDPDKTILPKLNFLRQKGASTSDLIDIITKNPRFLYLSLQNSIIPYYDLVKRFLLSDESTLASLKSRVCVIYSKTPSQNIQFLIQNGVPESKVAILYRNWNIVLTQNPPVFEKVVMELIQLGFNPKTTFFIVALRAKIMKPIWETKIDVYKKWGWSEQDIVAAFLRHPWCMMASVDKIEAVMKFFVDHIGWDSLALAKRPILIMMSLEKRVIPRTFVLKYLESKGLAKDKWITPFMVSEDVFLKKFVNCFEEEASYLLKLYEEKKDVSHNV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09694 356 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 SMART mt_12 74 105 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 SMART mt_12 278 312 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 PANTHER CGI-12 PROTEIN-RELATED 23 337 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 FunFam Mitochondrial transcription termination factor-like 124 339 - -
Vifa1g09694 356 Pfam mTERF 60 212 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 Pfam mTERF 230 320 IPR003690 GO:0003690|GO:0006355
Vifa1g09694 356 Gene3D Transcription termination factor 3, mitochondrial 146 344 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09694 Vifa-Chr1 1562935652 1562936722 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09694 mTERF 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09694 K15032 - gmx:102663105 395.586