Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09690 ATGAACCCCCTTCGTCTCGTAGGCACAGCTCTATGCTGTGTTGCAATTGTGTTTGGAGGATTAACTTTCCCCTCAGATGCACAACTTGATCCAAATTTTTACGGTAAAACTTGCCCCCAGTTGCAGTCTATAGTATCTCAAATCTTATCCAAAGTTGCTAAGAAGGATGCCCGAATGCCTGCTAGTCTCATCAGGCTCCATTTTCATGACTGCTTTGTTCAAGGTTGTGATGCATCCGTTTTGTTGAACAAAACTGGTACCATTGTGACTGAACAAGAAGCCGGACCAAATATCAATTCCTTAAGAGCTGCAGTATCTTCCGTTTTGACCGGAGGTCCAGGTTGGTTGGTTCCATTAGGAAGAAGAGATAGTTTAACAGCAAATCAAGACCTTGCTAATACAAATCTTCCAGGTCCATCTTCCACTCTACCTGAACTGAAATCTGCTTTTGCTAATCAAGGCCTCACCACACTTGATCTAGTATCACTCTCAGGTGCTCATTCATTTGGAAGATCACGTTGCTTTTTATTCTCTGACCGATTATTCAACTTCAACAGTACTGGAAAACCTGATCCAACTCTTGATCCAGCATACTTAAAAGTATTGCAGAAACAATGTCCTCAGAACGGGCCTGGAGATACCCGTGTCAATTTTGATCCAACCACTCCTGATATATTAGACAAGAACTACTACAACAATCTTCAAGTTAAAAAGGGTTTGCTTCAAAGTGATCAAGAATTGTTCTCAACACCAGGTGCAGATACTATTGGCATTGTCAACAATTTTGCCAATAACCAAAATGCTTTCTTTCAGAATTTTGCGAATTCGATGATTAGAATGGGAAATATTGGTGTGCTTACCGGAAAGAAAGGTGAAATTAGAACACAATGCAATTTTGTTAACCAGAAGAAGAAATCACCTGAGTTGGATCTTGCCACTGTGACTTCTACAGAACCAATTGAGGGGGGTGTGGTTAGTTCAATCTAA 987 0.4073 MNPLRLVGTALCCVAIVFGGLTFPSDAQLDPNFYGKTCPQLQSIVSQILSKVAKKDARMPASLIRLHFHDCFVQGCDASVLLNKTGTIVTEQEAGPNINSLRAAVSSVLTGGPGWLVPLGRRDSLTANQDLANTNLPGPSSTLPELKSAFANQGLTTLDLVSLSGAHSFGRSRCFLFSDRLFNFNSTGKPDPTLDPAYLKVLQKQCPQNGPGDTRVNFDPTTPDILDKNYYNNLQVKKGLLQSDQELFSTPGADTIGIVNNFANNQNAFFQNFANSMIRMGNIGVLTGKKGEIRTQCNFVNQKKKSPELDLATVTSTEPIEGGVVSSI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09690 328 Gene3D - 29 103 - -
Vifa1g09690 328 PANTHER PEROXIDASE 72-RELATED 103 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 FunFam Peroxidase 137 280 - -
Vifa1g09690 328 CDD secretory_peroxidase 28 300 IPR033905 GO:0004601|GO:0042744
Vifa1g09690 328 Gene3D - 104 301 - -
Vifa1g09690 328 ProSiteProfiles Plant heme peroxidase family profile. 28 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 Gene3D Peroxidase, domain 2 137 280 - -
Vifa1g09690 328 PRINTS Haem peroxidase superfamily signature 111 123 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Haem peroxidase superfamily signature 159 174 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 159 169 IPR019793 -
Vifa1g09690 328 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Plant peroxidase signature 217 232 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Plant peroxidase signature 275 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 PRINTS Plant peroxidase signature 233 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 Pfam Peroxidase 102 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g09690 328 SUPERFAMILY Heme-dependent peroxidases 28 301 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09690 Vifa-Chr1 1562038557 1562039959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09690 14 301 Peroxidase AT5G06720 51.735 1.71e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09690 K00430 - gmx:547499 398.282