Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09683 ATGTTTCATGCTATTTTTCTTGTCCTTTCCAGACTTTATGATTTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATCGTCTTCACTCGTGAAGGAAATGATCTGGTAGCCACTCAGAAGATCTCTCTTGCAGAAGCATTATCCGGCTGCACAGTGAATCTCACGACACTTGATGGTAGAAACTTGACTATAATCGTCAACAATGTCGTTCATCCTGAGTATGAGGAAGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACATCAAATTCCCACCTCGGCTCAATGCAGATCAGAAATCGGGATTGAAGAAAGCTGGATTTAGGTACCATCATGCTGAGTCAGATTACTTGATGCTTGTATATTGGATCCCTCATACCCCTGATAGCATTCCTGCAAATGCTTCACACCGTCTCGGCGTTGGTGCTTTTGTCGTCAATAACAAAAGAGAGGTGCTTGTGGTTCAGGAAACCAGTGGTAGATTTGGAGGCACAGGTGTATGGAAGATGCCTACTGGAGCTGTTAATGAAGGCGAGGATATTTGTGATGCTGTAATTAGAGAAGTGAAGGAAGAGACAGGGGTAGAGACAGAGTTTGTTGAAGTTTTAGCTTTCAGGCAAAGCCATAAATCTTTTTTTCAGAAATCAGACTTGTTCTTTGTTTGCATGTTGCAACCTCAATCCTTTGACATTCAAAGTCAGGCCTCAGAAATTGAAGCAACTAAGTGGATGCCTGTTGAAGACTATGCAGCCCAACCTTTTGTGCAAGAAAACGAGCTCTTTGATTTTATTGCGAAAATATGCTTATCGAAGTTGAATGACAACTACACTGGTTTTTCTAACGTACCTACTACTACATCTTCTGGCAAAAAAACTTATCTGTATTTAAACAATGATGCTATTGGTAGCCACTTGTTAGCTTCCAAAGAGCAAGCTTAG 1419 0.4228 MFHAIFLVLSRLYDLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQIVFTREGNDLVATQKISLAEALSGCTVNLTTLDGRNLTIIVNNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNIKFPPRLNADQKSGLKKAGFRYHHAESDYLMLVYWIPHTPDSIPANASHRLGVGAFVVNNKREVLVVQETSGRFGGTGVWKMPTGAVNEGEDICDAVIREVKEETGVETEFVEVLAFRQSHKSFFQKSDLFFVCMLQPQSFDIQSQASEIEATKWMPVEDYAAQPFVQENELFDFIAKICLSKLNDNYTGFSNVPTTTSSGKKTYLYLNNDAIGSHLLASKEQA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09683 472 FunFam Nudix hydrolase 8 298 436 - -
Vifa1g09683 472 Gene3D - 5 111 - -
Vifa1g09683 472 Pfam DnaJ C terminal domain 174 252 IPR002939 -
Vifa1g09683 472 MobiDBLite consensus disorder prediction 116 144 - -
Vifa1g09683 472 CDD Nudix_Hydrolase_12 297 428 - -
Vifa1g09683 472 Pfam NUDIX domain 297 417 IPR000086 -
Vifa1g09683 472 SUPERFAMILY Nudix 266 421 IPR015797 -
Vifa1g09683 472 ProSiteProfiles Nudix hydrolase domain profile. 296 428 IPR000086 -
Vifa1g09683 472 PANTHER NUDIX HYDROLASE RELATED 265 459 IPR003293 -
Vifa1g09683 472 Gene3D - 254 289 - -
Vifa1g09683 472 FunFam DnaJ subfamily B member 13 173 253 - -
Vifa1g09683 472 ProSitePatterns Nudix box signature. 333 354 IPR020084 GO:0016787
Vifa1g09683 472 Gene3D - 174 252 - -
Vifa1g09683 472 SUPERFAMILY HSP40/DnaJ peptide-binding domain 175 261 IPR008971 GO:0006457|GO:0051082
Vifa1g09683 472 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 298 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09683 Vifa-Chr1 1559870000 1559873909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09683 16 154 C3H Transcription Factor Family AT2G31510 75.540 7.66e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09683 K26956 - gmx:100818821 341.273