Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09671 ATGGCACTTTCTATGCATAAAGACGCTAACAATCAAATGGATGCTGGTAAGTACGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTACACAGAATGTCCTAAGCCTAGCTCTTTGAGAAGACAGCAGCTCATTCGGGAGTGTCCTATTCTCTCTAACATTGAACCTAAACAGATCAAAGTGTGGTTTCAGAACAGAAGGTGTCGTGAGAAGCAAAGAAAGGAAGCTTCTCGTTTGCAGACAGTGAATAGAAAACTGTCTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCATCTGGTTTATGAGAATGGATACATGAAGCAACAGATTCACACTGTGAGTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAATCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCCAACAACCCAGCTGGTCTCCTTGCCGTGGCTCAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATTGTTGCTGTTTCCCGCAATTGTAGTGGGATAGCGGCACGTGCCTGCGGCCTAGTGAGTCTAGAACCCACTAAGGTTGCCGAGATTCTTAAAGATCGTCTGTCATGGTATCGTGACTGCCGATGTGTTGATGTTTTGAATATTGTCCCCACAGGAGGCGGAGGTACAATAGAGCTTTTGTATATGCAGACATATGCGCCTACAACGTTGGCTGCAGCGCGAGACTTTTGGACACTACGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCGTTGAATGTTTCAACTGGTGGTCCGACAGGGCCTACTCCAACGAATTTTGTGAGGGCTGAAATGCTTCCTAGTGGTTTTCTAATTAGACCATGCGAGGGTGGTGGATCTATTATTCATATTGTTGATCATGTTGACTTGGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAAATCTTGGCTCAAAAATTGACTATTGCAGCATTGCAACATGTAAGACAGATTGCACAGGAGTCCAGTGGTGAAATTCAGTATGGTGGCGGACGCCAACCTGCTGTTTTGAGAACATTTAGTCAGAGACTTTGCAGAGGGTTTAATGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCTTTGCTGGGAAATGATGGCATTGAAGACGTGACAATTTCTGTGAACTCTTCTCCAAACAAGTTTTTAGAGTCTAATTACAATTCATCAATGTTCCCAGCATTTGGAGGCGGTGTCTTGTGTGCCAAGGCTTCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGCGGGAGCATCGATCGGAATGGGCTGATTATGGTGTTGATGCGTACTCTGCTGCTTGTCTCAAGTCTAGCCCCTATGCAGTTCCATGTGCAAGACCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCCCCTACGGTTGAGCACGAAGAGTTCCTTGAGGTTGTTCGTATAGAGGGTCATGCATTCACACCTGAAGATGTTGCATTGGCACGTGATATGTATCTGTTACAGCTCTGTAGTGGAATTGATGAAAATTCAATTGGAGCATGTGCTCAACTGGTCTTTGCACCTATAGACGAATCCTTTGCTGATGATGCCCTATTGCTTCCTTCTGGATTTCGAGTTATTCCTTTGGATCCTAAATCAGATGGTCCGGCAACATCAAGGACATTGGATTTGGCCTCAACACTTGAAGTCGGATCTAGTAATGCTCGAGCAGCTGGTGAAGGTGGTGATGGATACAACCTTAGATCTGTCCTTACTATCGCATTTCAATTTACCTTTGAGAATCATCTGCGTGACAATGTTGCGGCCATGGCTCGTCAATATGTACGTAGTGTTGTTGGATCCGTTCAGAGGGTGGCCATGGCTATTGCTCCGTCTCGCCAAGGTCCCCAGCTTGGTCCAAAATCACTTCCCGGTTCGCCAGAAGCTCATGCTCTAGCACGATGGGTCTGTAGGAGCTACAGGATGCACACTGGTGCCGAGCTTTTCCGTGTAGAGTCTACAGCTAGTGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTGAAAGCAACTGCATCTCCAATATTCACCTTTGCAAACCAAGCTGGACTAGACATGCTTGAAACAACTCTAGTTGCACTTCAGGATATAATGCTGGATAAAGTACTGGATGAAGCTGGTAGAAAGATTCTTTGCTCTGAATTCTCCAAGATAATGCAACAGGGTTATGCTTATCTGCCAGCAGGTATATGTGTATCAAGCATGAATAGACCAGTTTCTTATGAGCAAGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGTCTAGCATTCATGTTCATCAACTGGTCCTTTGTCTGA 2538 0.4531 MALSMHKDANNQMDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTVSASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDANNPAGLLAVAQETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLNIVPTGGGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNVSTGGPTGPTPTNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHVRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGIEDVTISVNSSPNKFLESNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRIEGHAFTPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPATSRTLDLASTLEVGSSNARAAGEGGDGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRQGPQLGPKSLPGSPEAHALARWVCRSYRMHTGAELFRVESTASDAILKQLWHHSDAIMCCSVKATASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09671 845 SUPERFAMILY Bet v1-like 167 378 - -
Vifa1g09671 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 845 IPR044830 GO:0003700
Vifa1g09671 845 SMART START_1 166 376 IPR002913 GO:0008289
Vifa1g09671 845 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Vifa1g09671 845 Pfam START domain 167 375 IPR002913 GO:0008289
Vifa1g09671 845 Gene3D - 9 83 - -
Vifa1g09671 845 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Vifa1g09671 845 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vifa1g09671 845 Coils Coil 82 106 - -
Vifa1g09671 845 SUPERFAMILY Bet v1-like 414 601 - -
Vifa1g09671 845 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vifa1g09671 845 MobiDBLite consensus disorder prediction 134 158 - -
Vifa1g09671 845 Pfam MEKHLA domain 700 844 IPR013978 -
Vifa1g09671 845 MobiDBLite consensus disorder prediction 134 159 - -
Vifa1g09671 845 CDD homeodomain 17 77 IPR001356 GO:0003677
Vifa1g09671 845 Gene3D - 201 382 IPR023393 -
Vifa1g09671 845 SMART HOX_1 14 80 IPR001356 GO:0003677
Vifa1g09671 845 CDD bZIP 69 108 - -
Vifa1g09671 845 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vifa1g09671 845 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09671 Vifa-Chr1 1556882301 1556887025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09671 1 845 Homeobox Transcription Factor Family AT2G34710 77.363 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g09671 START 1.2e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09671 K09338 - gmx:100779499 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09671 1 1556882301 1556887025 Vifa1g09671 1 1556882301 1556887025 ECH