Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09670 ATGGCACTTTCTATGCATAAAGACGCTAACAATCAAATGGATGCTGGTAAGTACGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTACACAGAATGTCCTAAGCCTAGCTCTTTGAGAAGACAGCAGCTCATTCGGGAGTGTCCTATTCTCTCTAACATTGAACCTAAACAGATCAAAGTGTGGTTTCAGAACAGAAGGTGTCGTGAGAAGCAAAGAAAGGAAGCTTCTCGTTTGCAGACAGTGAATAGAAAACTGTCTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCATCTGGTTTATGAGAATGGATACATGAAGCAACAGATTCACACTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAATCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCCAACAACCCAGCTGGTCTCCTTGCCGTGGCTCAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATTGTTGCTGTTTCCCGCAATTGTAGTGGGATAGCGGCACGTGCCTGCGGCCTAGTGAGTCTAGAACCCACTAAGGTTGCCGAGATTCTTAAAGATCGTCTGTCATGGTATCGTGACTGCCGATGTGTTGATGTTTTGAATATTGTCCCCACAGGAGGCGGAGGTACAATAGAGCTTTTGTATATGCAGACATATGCGCCTACAACGTTGGCTGCAGCGCGAGACTTTTGGACACTACGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCGTTGAATGTTTCAACTGGTGGTCCGACAGGGCCTACTCCAACGAATTTTGTGAGGGCTGAAATGCTTCCTAGTGGTTTTCTAATTAGACCATGCGAGGGTGGTGGATCTATTATTCATATTGTTGATCATGTTGACTTGGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAAATCTTGGCTCAAAAATTGACTATTGCAGCATTGCAACATGTAAGACAGATTGCACAGGAGTCCAGTGGTGAAATTCAGTATGGTGGCGGACGCCAACCTGCTGTTTTGAGAACATTTAGTCAGAGACTTTGCAGAGGGTTTAATGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCTTTGCTGGGAAATGATGGCATTGAAGACGTGACAATTTCTGTGAACTCTTCTCCAAACAAGTTTTTAGAGTCTAATTACAATTCATCAATGTTCCCAGCATTTGGAGGCGGTGTCTTGTGTGCCAAGGCTTCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGCGGGAGCATCGATCGGAATGGGCTGATTATGGTGTTGATGCGTACTCTGCTGCTTGTCTCAAGTCTAGCCCCTATGCAGTTCCATGTGCAAGACCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCCCCTACGGTTGAGCACGAAGAGTTCCTTGAGGTTGTTCGTATAGAGGGTCATGCATTCACACCTGAAGATGTTGCATTGGCACGTGATATGTATCTGTTACAGCTCTGTAGTGGAATTGATGAAAATTCAATTGGAGCATGTGCTCAACTGGTCTTTGCACCTATAGACGAATCCTTTGCTGATGATGCCCTATTGCTTCCTTCTGGATTTCGAGTTATTCCTTTGGATCCTAAATCAGATGGTCCGGCAACATCAAGGACATTGGATTTGGCCTCAACACTTGAAGTCGGATCTAGTAATGCTCGAGCAGCTGGTGAAGGTGGTGATGGATACAACCTTAGATCTGTCCTTACTATCGCATTTCAATTTACCTTTGAGAATCATCTGCGTGACAATGTTGCGGCCATGGCTCGTCAATATGTACGTAGTGTTGTTGGATCCGTTCAGAGGGTGGCCATGGCTATTGCTCCGTCTCGCCAAGGTCCCCAGCTTGGTCCAAAATCACTTCCCGGTTCGCCAGAAGCTCATGCTCTAGCACGATGGGTCTGTAGGAGCTACAGGATGCACACTGGTGCCGAGCTTTTCCGTGTAGAGTCTACAGCTAGTGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTGAAAGCAACTGCATCTCCAATATTCACCTTTGCAAACCAAGCTGGACTAGACATGCTTGAAACAACTCTAGTTGCACTTCAGGATATAATGCTGGATAAAGTACTGGATGAAGCTGGTAGAAAGATTCTTTGCTCTGAATTCTCCAAGATAATGCAACAGGGTTATGCTTATCTGCCAGCAGGTATATGTGTATCAAGCATGAATAGACCAGTTTCTTATGAGCAAGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGTCTAGCATTCATGTTCATCAACTGGTCCTTTGTCTGA 2532 0.453 MALSMHKDANNQMDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDANNPAGLLAVAQETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLNIVPTGGGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNVSTGGPTGPTPTNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHVRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGIEDVTISVNSSPNKFLESNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRIEGHAFTPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPATSRTLDLASTLEVGSSNARAAGEGGDGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRQGPQLGPKSLPGSPEAHALARWVCRSYRMHTGAELFRVESTASDAILKQLWHHSDAIMCCSVKATASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09670 843 SUPERFAMILY Bet v1-like 165 376 - -
Vifa1g09670 843 Gene3D - 199 380 IPR023393 -
Vifa1g09670 843 MobiDBLite consensus disorder prediction 132 157 - -
Vifa1g09670 843 SMART START_1 164 374 IPR002913 GO:0008289
Vifa1g09670 843 Gene3D - 9 83 - -
Vifa1g09670 843 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Vifa1g09670 843 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vifa1g09670 843 Coils Coil 82 106 - -
Vifa1g09670 843 SUPERFAMILY Bet v1-like 412 599 - -
Vifa1g09670 843 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vifa1g09670 843 CDD START_ArGLABRA2_like 159 375 - -
Vifa1g09670 843 ProSiteProfiles START domain profile. 155 356 IPR002913 GO:0008289
Vifa1g09670 843 Pfam MEKHLA domain 698 842 IPR013978 -
Vifa1g09670 843 CDD homeodomain 17 77 IPR001356 GO:0003677
Vifa1g09670 843 SMART HOX_1 14 80 IPR001356 GO:0003677
Vifa1g09670 843 CDD bZIP 69 108 - -
Vifa1g09670 843 Pfam START domain 165 373 IPR002913 GO:0008289
Vifa1g09670 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 843 IPR044830 GO:0003700
Vifa1g09670 843 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vifa1g09670 843 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09670 Vifa-Chr1 1556882301 1556887025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09670 1 843 Homeobox Transcription Factor Family AT2G34710 77.661 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g09670 START 1.2e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09670 K09338 - gmx:100779499 1536.55