Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09665 ATGAATTTTGTCATCTGCCGAAAACCTAGCACCTGCTTCAACGTGATTCCACCATCTCAGAATCAACACTTCTGCAACAGTTTCGGAGTCCCCGTTCAATTCGCCGAGGTGAAAGTAATGGATGAGGGAAAACATAAATCGAGAAAAGAAGACGTTGATTTGAAGAGGAGTCATCGAGATCGCGATAGAACTGGTGAAAGAGGTAAGGATAAGGATAGAAGTGATGGCAGGCATAAGGATAATCGGGAGAAGAGGGATCGAGAGTCTCGAAGACATGATAGAGAGAAAAGTACTGATTCTGATGATAAGCATGATAGAGAGAAGGAGAAGCGGAGAGATGTTAAAGAGAAGGATCGGTCACGGGTTCATGACGTTGAGAGAGAAAATGTGAGAGATAGAAAGAGGGAGAGAGATAGGGAAGAGAAAGAAAAGGAGAGAGTGAGGGAGAAAGAAAGAGATAGAGAAGAGAAAGAAAAGGAGAAAGTGAGGGACAGGGAAGACAAGGAGAAAGAGAGAGTAAGGGAGAAAGAAAGAGAGAGGGAAAGAAAGGAGGATAAGGAGAGGATTAGAGAGAAAGAAAGGGTCAGGGAGAAGCGGGATCATGAGAGGGAGAAGGAAAAGGAAAAGGAAAGAGATAAAGGGAGGAGAGGACGAGGGAGGGAGAAGCATAGAGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGAAATCGGAAGAGGCATAAGAAAGAGGACGAAGATTATAAGGGTAGAGAGAAGGAAAAGAGTTCTAGCAAATCAAACAGGAAAATTGAGGGACTTGATGCAAGCCCTAGAAGAAAGAGTGACGGGGATGACTCGGATTCTAAAGATAGAGAGAAAAAACCTACCCGTGAGGAGGAGATGGAAGATGAACAAAGGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGAAGAGTTCAAGAGTGGCAAGAGTTAAGGAGGAAGAAGGAAGAGGCGGAAAGAGAAAAGCAAGGTGAAGCAAGTGCCGCTGAACTTGAGTCGGGAAAGGCATGGACACTTGAAGGGGAGGAATCTGATGATGAAGAAGGAACAGGTAAACATACTGCTATGGACATAGATGAAGACGACAAAGTTGCTGATAAGGAACCTATAGAGTCGATGGTGGTAGATGTTGACCATGGAACAGTTGTGGTTGATTTACAAAATGGAGATACTGGTGCTCCTTCAGACGAGGAAATAGACCCATTGGATGCTTTTATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGCTGAACAATGCTGTTAACTCAACACCTTCTGATAAAACTTCTGACTTGAAACCCAAAGATAAAGGGGACGAGCGTAGTAATGGCGGACAGTCAAGGAAAGGTTCAGGGAAGTCTATTGGCAGGATAATTCCTGGCGAAGAGTCCGACTCAGATTATGCAGATCCTGAAACTGACGGGGATCCAGTTGAAGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACGAAAGTTGAAAAACTTTCGATAGTTGACCACTCAAAGATTGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAGGAGGTCTCAAAGATGACTCTTGAAGAAGTTGCTTTATACAGGAAGCAGTTAGAGTTAAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAATATTGGATACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAGGCTCAAGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCATTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTCTTGCAGGAGATGGACCTATAGGGCTTATTATGGCCCCTACAAGAGAGCTTGTTCAACAGATTCATAGTGATATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTGTCCCTGTCTATGGAGGCTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGTAGAGTCACCTATCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATAGTTCAAAATATTCGACCGGATCGTCAAACAGTGCTCTTCTCTGCCACTTTTCCCCGCCAGGTTGAAATTTTAGCTCGCAAGGTTTTGAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATTGCACAGTTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCCTAAGACTCTTGGAACTACTTGGAGAATGGTACGAGAAGGGAAAGATTTTAATATTTGTCCACTCACAGGAGAAATGTGATGCCTTGTTCAAGGATCTACTCAGGCACGGTTATCCTTGTCTTTCTCTTCATGGAGCTAAGGATCAAACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCGACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGTTAGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTACGTACATCGTGTTGGGCGCACTGGTCGTGCTGGCCGGAAAGGTTGTGCCATCACATTTATATCTGAAGAAGATGCAAGATATGCACCGGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAGATCCCTCGCCGATGGCTTTATGGCGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGAAGAGGAAAGGAAAGCAGCCAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCCTGCTCTTTCTCAGATTATTGCTGCAACAAAAGCAAATGCTCCCTCAATGCCTACTCCCATCTCTGCATCCCAACTGATTTCAAATGGTGGGCTACCTGTTTCTTTGCCTTCTGTTCTTGGTCTCCAGACTGCAACAGTCTTGCCTGGAACAGGGCTACCCCTTGCTACAAACGACGGGGCAGCTCGAGCTGCACTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAGCTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAGTGGACTGGAGCTGCCATTACCACCAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTATTTGTTCATTGAGGGTCCTAGTGAGAAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAATCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAG 3597 0.4401 MNFVICRKPSTCFNVIPPSQNQHFCNSFGVPVQFAEVKVMDEGKHKSRKEDVDLKRSHRDRDRTGERGKDKDRSDGRHKDNREKRDRESRRHDREKSTDSDDKHDREKEKRRDVKEKDRSRVHDVERENVRDRKRERDREEKEKERVREKERDREEKEKEKVRDREDKEKERVREKERERERKEDKERIREKERVREKRDHEREKEKEKERDKGRRGRGREKHRDVDSENSDGELRERNRKRHKKEDEDYKGREKEKSSSKSNRKIEGLDASPRRKSDGDDSDSKDREKKPTREEEMEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKQGEASAAELESGKAWTLEGEESDDEEGTGKHTAMDIDEDDKVADKEPIESMVVDVDHGTVVVDLQNGDTGAPSDEEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKTSDLKPKDKGDERSNGGQSRKGSGKSIGRIIPGEESDSDYADPETDGDPVEEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEVSKMTLEEVALYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVLAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLRSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEEEERKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALSQIIAATKANAPSMPTPISASQLISNGGLPVSLPSVLGLQTATVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEKSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09665 1198 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 715 723 IPR000629 -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 41 375 - -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 959 1008 - -
Vifa1g09665 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 918 IPR027417 -
Vifa1g09665 1198 PANTHER RNA HELICASE 508 975 - -
Vifa1g09665 1198 CDD SF2_C_DEAD 781 911 - -
Vifa1g09665 1198 Pfam DEAD/DEAH box helicase 585 756 IPR011545 GO:0003676|GO:0005524
Vifa1g09665 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 797 941 IPR001650 -
Vifa1g09665 1198 SMART helicmild6 821 902 IPR001650 -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 439 456 - -
Vifa1g09665 1198 CDD KH-I_AtRH42_like 1096 1197 - -
Vifa1g09665 1198 Coils Coil 130 212 - -
Vifa1g09665 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 769 IPR014001 -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 475 491 - -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 41 338 - -
Vifa1g09665 1198 Coils Coil 294 338 - -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 966 990 - -
Vifa1g09665 1198 Gene3D - 771 944 IPR027417 -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 426 493 - -
Vifa1g09665 1198 Pfam Helicase conserved C-terminal domain 794 902 IPR001650 -
Vifa1g09665 1198 CDD DEADc_DDX46 549 770 - -
Vifa1g09665 1198 SMART ultradead3 579 784 IPR014001 -
Vifa1g09665 1198 MobiDBLite consensus disorder prediction 346 375 - -
Vifa1g09665 1198 FunFam probable ATP-dependent RNA helicase DDX17 522 772 - -
Vifa1g09665 1198 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 560 588 IPR014014 GO:0003724
Vifa1g09665 1198 Gene3D - 513 770 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09665 Vifa-Chr1 1555302964 1555306767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09665 547 922 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 2.99e-58 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09665 K12811 - gmx:100784306 1573.53