Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g09665 | ATGAATTTTGTCATCTGCCGAAAACCTAGCACCTGCTTCAACGTGATTCCACCATCTCAGAATCAACACTTCTGCAACAGTTTCGGAGTCCCCGTTCAATTCGCCGAGGTGAAAGTAATGGATGAGGGAAAACATAAATCGAGAAAAGAAGACGTTGATTTGAAGAGGAGTCATCGAGATCGCGATAGAACTGGTGAAAGAGGTAAGGATAAGGATAGAAGTGATGGCAGGCATAAGGATAATCGGGAGAAGAGGGATCGAGAGTCTCGAAGACATGATAGAGAGAAAAGTACTGATTCTGATGATAAGCATGATAGAGAGAAGGAGAAGCGGAGAGATGTTAAAGAGAAGGATCGGTCACGGGTTCATGACGTTGAGAGAGAAAATGTGAGAGATAGAAAGAGGGAGAGAGATAGGGAAGAGAAAGAAAAGGAGAGAGTGAGGGAGAAAGAAAGAGATAGAGAAGAGAAAGAAAAGGAGAAAGTGAGGGACAGGGAAGACAAGGAGAAAGAGAGAGTAAGGGAGAAAGAAAGAGAGAGGGAAAGAAAGGAGGATAAGGAGAGGATTAGAGAGAAAGAAAGGGTCAGGGAGAAGCGGGATCATGAGAGGGAGAAGGAAAAGGAAAAGGAAAGAGATAAAGGGAGGAGAGGACGAGGGAGGGAGAAGCATAGAGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGAAATCGGAAGAGGCATAAGAAAGAGGACGAAGATTATAAGGGTAGAGAGAAGGAAAAGAGTTCTAGCAAATCAAACAGGAAAATTGAGGGACTTGATGCAAGCCCTAGAAGAAAGAGTGACGGGGATGACTCGGATTCTAAAGATAGAGAGAAAAAACCTACCCGTGAGGAGGAGATGGAAGATGAACAAAGGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGAAGAGTTCAAGAGTGGCAAGAGTTAAGGAGGAAGAAGGAAGAGGCGGAAAGAGAAAAGCAAGGTGAAGCAAGTGCCGCTGAACTTGAGTCGGGAAAGGCATGGACACTTGAAGGGGAGGAATCTGATGATGAAGAAGGAACAGGTAAACATACTGCTATGGACATAGATGAAGACGACAAAGTTGCTGATAAGGAACCTATAGAGTCGATGGTGGTAGATGTTGACCATGGAACAGTTGTGGTTGATTTACAAAATGGAGATACTGGTGCTCCTTCAGACGAGGAAATAGACCCATTGGATGCTTTTATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGCTGAACAATGCTGTTAACTCAACACCTTCTGATAAAACTTCTGACTTGAAACCCAAAGATAAAGGGGACGAGCGTAGTAATGGCGGACAGTCAAGGAAAGGTTCAGGGAAGTCTATTGGCAGGATAATTCCTGGCGAAGAGTCCGACTCAGATTATGCAGATCCTGAAACTGACGGGGATCCAGTTGAAGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACGAAAGTTGAAAAACTTTCGATAGTTGACCACTCAAAGATTGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAGGAGGTCTCAAAGATGACTCTTGAAGAAGTTGCTTTATACAGGAAGCAGTTAGAGTTAAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAATATTGGATACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAGGCTCAAGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCATTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTCTTGCAGGAGATGGACCTATAGGGCTTATTATGGCCCCTACAAGAGAGCTTGTTCAACAGATTCATAGTGATATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTGTCCCTGTCTATGGAGGCTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGTAGAGTCACCTATCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATAGTTCAAAATATTCGACCGGATCGTCAAACAGTGCTCTTCTCTGCCACTTTTCCCCGCCAGGTTGAAATTTTAGCTCGCAAGGTTTTGAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATTGCACAGTTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCCTAAGACTCTTGGAACTACTTGGAGAATGGTACGAGAAGGGAAAGATTTTAATATTTGTCCACTCACAGGAGAAATGTGATGCCTTGTTCAAGGATCTACTCAGGCACGGTTATCCTTGTCTTTCTCTTCATGGAGCTAAGGATCAAACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCGACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGTTAGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTACGTACATCGTGTTGGGCGCACTGGTCGTGCTGGCCGGAAAGGTTGTGCCATCACATTTATATCTGAAGAAGATGCAAGATATGCACCGGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAGATCCCTCGCCGATGGCTTTATGGCGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGAAGAGGAAAGGAAAGCAGCCAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCCTGCTCTTTCTCAGATTATTGCTGCAACAAAAGCAAATGCTCCCTCAATGCCTACTCCCATCTCTGCATCCCAACTGATTTCAAATGGTGGGCTACCTGTTTCTTTGCCTTCTGTTCTTGGTCTCCAGACTGCAACAGTCTTGCCTGGAACAGGGCTACCCCTTGCTACAAACGACGGGGCAGCTCGAGCTGCACTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAGCTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAGTGGACTGGAGCTGCCATTACCACCAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTATTTGTTCATTGAGGGTCCTAGTGAGAAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAATCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAG | 3597 | 0.4401 | MNFVICRKPSTCFNVIPPSQNQHFCNSFGVPVQFAEVKVMDEGKHKSRKEDVDLKRSHRDRDRTGERGKDKDRSDGRHKDNREKRDRESRRHDREKSTDSDDKHDREKEKRRDVKEKDRSRVHDVERENVRDRKRERDREEKEKERVREKERDREEKEKEKVRDREDKEKERVREKERERERKEDKERIREKERVREKRDHEREKEKEKERDKGRRGRGREKHRDVDSENSDGELRERNRKRHKKEDEDYKGREKEKSSSKSNRKIEGLDASPRRKSDGDDSDSKDREKKPTREEEMEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKQGEASAAELESGKAWTLEGEESDDEEGTGKHTAMDIDEDDKVADKEPIESMVVDVDHGTVVVDLQNGDTGAPSDEEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKTSDLKPKDKGDERSNGGQSRKGSGKSIGRIIPGEESDSDYADPETDGDPVEEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEVSKMTLEEVALYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVLAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLRSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEEEERKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALSQIIAATKANAPSMPTPISASQLISNGGLPVSLPSVLGLQTATVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEKSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV | 1198 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g09665 | 1198 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 715 | 723 | IPR000629 | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 41 | 375 | - | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 959 | 1008 | - | - | |
Vifa1g09665 | 1198 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 632 | 918 | IPR027417 | - | |
Vifa1g09665 | 1198 | PANTHER | RNA HELICASE | 508 | 975 | - | - | |
Vifa1g09665 | 1198 | CDD | SF2_C_DEAD | 781 | 911 | - | - | |
Vifa1g09665 | 1198 | Pfam | DEAD/DEAH box helicase | 585 | 756 | IPR011545 | GO:0003676|GO:0005524 | |
Vifa1g09665 | 1198 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 797 | 941 | IPR001650 | - | |
Vifa1g09665 | 1198 | SMART | helicmild6 | 821 | 902 | IPR001650 | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 439 | 456 | - | - | |
Vifa1g09665 | 1198 | CDD | KH-I_AtRH42_like | 1096 | 1197 | - | - | |
Vifa1g09665 | 1198 | Coils | Coil | 130 | 212 | - | - | |
Vifa1g09665 | 1198 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 591 | 769 | IPR014001 | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 475 | 491 | - | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 41 | 338 | - | - | |
Vifa1g09665 | 1198 | Coils | Coil | 294 | 338 | - | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 966 | 990 | - | - | |
Vifa1g09665 | 1198 | Gene3D | - | 771 | 944 | IPR027417 | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 426 | 493 | - | - | |
Vifa1g09665 | 1198 | Pfam | Helicase conserved C-terminal domain | 794 | 902 | IPR001650 | - | |
Vifa1g09665 | 1198 | CDD | DEADc_DDX46 | 549 | 770 | - | - | |
Vifa1g09665 | 1198 | SMART | ultradead3 | 579 | 784 | IPR014001 | - | |
Vifa1g09665 | 1198 | MobiDBLite | consensus disorder prediction | 346 | 375 | - | - | |
Vifa1g09665 | 1198 | FunFam | probable ATP-dependent RNA helicase DDX17 | 522 | 772 | - | - | |
Vifa1g09665 | 1198 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 560 | 588 | IPR014014 | GO:0003724 | |
Vifa1g09665 | 1198 | Gene3D | - | 513 | 770 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g09665 | Vifa-Chr1 | 1555302964 | 1555306767 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g09665 | 547 | 922 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.368 | 2.99e-58 | 205 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g09665 | K12811 | - | gmx:100784306 | 1573.53 |