Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09663 ATGTCAGCGAATAATCATCTAATGGAACTTGGAAGGCCCTCATCAGGTAGAAGAAGATTGAAAGATTTATTGGTTCAGAAGGATAATCGTGTTTGTGCTGATTGTAATGCCCCAGATCCTAAATGGGCGTCTGCTAACATTGGGGTGTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGGACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGGGGAAATGCTTCAGCTAATTCAATTTATGAGGCTTATTTTCCTGAAGGATATACAAAACCCGGACCAGAAGCCAGTCACGAGCAGCGTTCTAAGTTTATACGGTCAAAATATGATTTGCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCTGGAAAAAGCAGCCTATCAAGTTCTTCCAAAAGTAGTTTTATGGATAGTTTTAAAAGCGCTGGCTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATTAAAGGGACAGATTTAGCCATCAGGGATATAAAGTCAAGTGACCCATATGTTGTTTTGAACCTCGGCACACAGACTATACAGACAAGTGTAGTGAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCGGAGGAATATGGACAGCTGAAATTGAAAGTATTTGATCATGACACATTTTCTGCGGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCACTGATAACATCTGCCATGGCATTTGGAGACGCTGGAATGTTTGGAGATATGCAGATCGGAAAGTGGTTGAAATCTGACGACAATGCACTCATTGAGGATAGTGCAGTCAAAATTATTGATGGTACGGTTAAACAAATGATGACACTCAAACTCCAGAATGTTGAATCTGGAGAAATAGAATTAGAACTCGAATGGATTTCTCTTGATCAATAA 990 0.3919 MSANNHLMELGRPSSGRRRLKDLLVQKDNRVCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYFPEGYTKPGPEASHEQRSKFIRSKYDLQEFLKPSLRIVSGKSSLSSSSKSSFMDSFKSAGSQRMEGMVEFIGMLKVKVIKGTDLAIRDIKSSDPYVVLNLGTQTIQTSVVKSNLNPVWNEEHMLSVPEEYGQLKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSAVKIIDGTVKQMMTLKLQNVESGEIELELEWISLDQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09663 329 CDD ArfGap 20 126 - -
Vifa1g09663 329 Pfam C2 domain 174 263 IPR000008 -
Vifa1g09663 329 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 171 329 - -
Vifa1g09663 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 326 IPR035892 -
Vifa1g09663 329 Gene3D Arf GTPase activating protein 5 138 IPR038508 -
Vifa1g09663 329 Gene3D C2 domain 171 329 IPR035892 -
Vifa1g09663 329 SMART C2_3c 174 269 IPR000008 -
Vifa1g09663 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Vifa1g09663 329 CDD C2_ArfGAP 172 316 - -
Vifa1g09663 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Vifa1g09663 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 329 IPR044518 GO:0005096|GO:0005543
Vifa1g09663 329 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Vifa1g09663 329 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Vifa1g09663 329 FunFam Arf-GAP with dual PH domain-containing protein 1 12 140 - -
Vifa1g09663 329 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Vifa1g09663 329 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Vifa1g09663 329 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Vifa1g09663 329 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09663 Vifa-Chr1 1554581511 1554586056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09663 10 329 C2H2 Transcription Factor Family AT4G21160 72.727 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09663 K12486 - gmx:100810806 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09663 1 1554581511 1554586056 Vifa1g09663 1 1554581511 1554586056 ECH