Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09662 ATGGCTCACATCTGCCAATGTCTGAGTCGACTGTTAACCTCCCGGCGAGACTCTCCGGTGACCATTTCCGGCAACCACCGCAAAACCGGTCAACAGTTTGTGGAGGAAGTTCTGTCACTCGCACACGGTCTTCTCCAGCTTGGAATCTCACCCGGTGACGTTGTCGCCATCTCTGCTTACAACAGTGATTCGTATTTGGAATGGTTATTAGCCATTGCATTTGTTGGAGGAATTGTTGCTCCTTTGAACTATCGCTGGAGTTTTGAAGAGGCAAGGTTTGCAATGGGTGTAGTGAAGCCAGTGATGTTAGTGATTGATGAGAGTTGCTATTCATGGTACTTCAAATTCCAACAAATTGATATTCAATTTTTGAAGTGGCGTGTTTTCTTGGGTTCTCCTTCTTCAGATTTTGCAAACAAATGGAACGTGTTGACTCCAGGGATACTTAAGAAGCATATTGTGAAACCTATAGAGTTTAATTACTCCTGGGCATCTGAAGGAGTTGTCATAATATGCTTTACTTCAGGAACTACTGGAAAACCCAAGGGAGTGACAATAAGCCATGAAGCTTTGATCATACAGTCCCTCGCAAAGATTGCCATAGTTGGATATAGTGAAGATGATGTTTATCTTCATACTGCTCCATTGTGTCACATTGGTGGCTTGTCATCAGCAATGGCCATGCTCATGGTTGGAGGTTGCCATGTATTCATGCCAAAGTTTGATGCAGAATTAGCTGTTGGTGCCATAGAACAACATGCTGTCACATCTTTTATCACAGTTCCTGCCATAATGGCCAGTTTGATTTCTATTGTTAGGAAAAAAGAAACATGGAAAGGGGGAGAACCTGTCCAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTTATCAAAGATAGTAACATATTCTTCCATAAAGCTAAGCTTATTTCCGCTTATGGGATGACAGAGGCATGCTCTTCACTGACATTCTTGACTCTATATGATCCAATGCAAAAAACCACAAGCAATACTTTTCAATCAAATGGTGAGGTAGAATCCAAACATCTCATTCACCAACCACAAGGTGTTTGTGTCGGCAAGGCTGCACCTCATGTAGAGCTGAAGATATGTACAGATTCTTCTGGTGACACTGGAAGAATTTTAACTAGAGGACCACATTTAATGGTCAGGTATTGGGATCAAACTCTCACAAACTCATCTACTAATCGGAGGAATGAAGTATGGCTTGACACAGGTGACATTGGATCAATGGACTGTCATGGTAATTTATGGCTCCTTGGACGTACAAATGGTCGCATCAAGAGTGGAGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAACTCTATTAGGACATCCGGGGATTGCAAGTGTTGTTATTGTAGGAATTCCAGATGCTCGTTTCACAGAGCTGGTAACAGCATGTATCCAACCTAGTGAAAATTGGCAATGGTTAGAGCATTCTACTTCAAATGAAGAGTATCACTTATCTAAAAAGAATCTCCAACAATACTGTTTGGAAAATAGTTTAAGCAGGTTTAAGATTCCAAAGATATTTATTGAATGGAAGAAGCCTTTTCCAGTCACTACCACAGGAAAAATAAGAAGAGACCAAGTTCGAAAGGAGGTTGTGTCTGAGCTACAATCTTTGCATAGTAATCTTTGA 1674 0.4158 MAHICQCLSRLLTSRRDSPVTISGNHRKTGQQFVEEVLSLAHGLLQLGISPGDVVAISAYNSDSYLEWLLAIAFVGGIVAPLNYRWSFEEARFAMGVVKPVMLVIDESCYSWYFKFQQIDIQFLKWRVFLGSPSSDFANKWNVLTPGILKKHIVKPIEFNYSWASEGVVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVFMPKFDAELAVGAIEQHAVTSFITVPAIMASLISIVRKKETWKGGEPVQKILNGGGSLSLELIKDSNIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTTSNTFQSNGEVESKHLIHQPQGVCVGKAAPHVELKICTDSSGDTGRILTRGPHLMVRYWDQTLTNSSTNRRNEVWLDTGDIGSMDCHGNLWLLGRTNGRIKSGGENIYPEEVEATLLGHPGIASVVIVGIPDARFTELVTACIQPSENWQWLEHSTSNEEYHLSKKNLQQYCLENSLSRFKIPKIFIEWKKPFPVTTTGKIRRDQVRKEVVSELQSLHSNL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09662 557 Pfam AMP-binding enzyme 15 438 IPR000873 -
Vifa1g09662 557 Gene3D - 434 550 IPR045851 -
Vifa1g09662 557 CDD AFD_class_I 168 538 - -
Vifa1g09662 557 Coils Coil 543 557 - -
Vifa1g09662 557 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Vifa1g09662 557 PANTHER ACYL-COA SYNTHETASE 23 546 - -
Vifa1g09662 557 Pfam AMP-binding enzyme C-terminal domain 447 536 IPR025110 -
Vifa1g09662 557 SUPERFAMILY Acetyl-CoA synthetase-like 4 551 - -
Vifa1g09662 557 Gene3D - 3 432 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09662 Vifa-Chr1 1554301937 1554306602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09662 40 465 Monolignol Biosynthesis Gene Families AT3G21240 28.995 7.20e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09662 K14760 - gmx:100809925 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09662 1 1554301937 1554306602 Vifa1g09662 1 1554301937 1554306602 ECH