Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09660 ATGATGGGGAAGGTGATTGGAGAGGGAGTATTGATTGTGCTGATTTTGATGATAGTGAGTGAAAATGTAGAGGCTCAACCAAAGTCAATTCTTATCAATTGTGGTTCAAATGCTTCTGTGAATGTTGATGGTAGGAGATGGATGGGGGATATGGTTGTTAACAACAATGTTACCCTTAATTCTCCTGGTGTTGTTGCTTCCACTGATGCTTTAAGTGGGAGTTCAATCTATGAGCCGCTTTATCGAACGGCGAGAGTTTTTACGGCTTCTTTGAATTACACAATCAGAGGAGTTCAGGGAAAGTATTTTGTTAGGTTTCATTTATGTCCCTTTGAGATTGTGGACCACAATGTGAATGAGTCCTCTTTTGGTGTTGTTGTCAATGGTATGAAACTTTTGTCTGAGTTTAACGTTGCGGGTAAGATATCCGAAAAGAATGCGAACTTGCAGAATTCGGAAAGGAATTCAAGTTTATTTTTTTTGGTTAAGGAGTATATTCTTGACGTCGATGATGGTTTGCTTGTGATTGAGTTTGTTCCGAGTAGAAACTCGTTTGGCTTCGCCAATGCCATTGAGATTGTTCCGGTTGTTGGTGAACTGTTCGATGGTTCGGTCGGTAAAGTTGGTGGTGGAAACTTGAGCTTGGCTGGACATGGGATGGAGACTATGTATAGGTTAAATGTTGGTGGTCCTGAGATTCAATCCAACGAGGATCCTGATCTTCGGAGAATTTGGGAAGTTGATTCTAGCTATATGATCACGGAAAATGCTGGAGTAGGAATGAAGAACAGCTCGAATATTACATATGCTTTGGTGAATGATACTTCAGTAGCTCCTCTCCTTGTGTATGAAACTGCGAGGGCAATGTCCAACACTGAAGTTTTGGACAAAAGATTTAACATGTCGTGGAAATTTGAAGTTGATCCTGATTTTGATTACGTTGTCCGGTTACATTTTTGCGAGCTGATGTATGATAAGTCAAACGAGAGAGTATTCAGGATCTACATAAACAACAGGACAGCTGCAGATAATCTCGATGTGTTTGTTCGAGCAGGAGGAAAGAATAAAGCGTATCACCTAGATCATTATGATTCCGCGTCGATGAGGATGGGCATGCTTTGGGTTCAACTAGGTCCTGATACCGCTGCTGGTGCTGCGGGAACTGATGCACTCTTGAATGGTCTCGAGATTTTTAAGCTTAGTCGGAACGGGAATCTTGCCTATGTGGAGAGATACAACTCGGCTGGGAATTCGGGAAGCAAATCGAAGTCAAAAGTTCTTTGGATTGGAGTAGGAGCAGGTATAGCTTCTGTGGCTATAATTGCATGTATAGGTGTCTTGGTTTTCTGTTTCTGCAAAAGAAGGAGAAAGGAATCAAGTGATACCAAAAACAACTCTCCTGGTTGGCTACCGATATTCCTTTACGGAGGAGGGGCTGCTGTAAACAGCACTGTAGGTGTCAAGGGATCAAATGGAAATCAGAAGTTATATGGATCCGTGGCCTCAACTGGAGCTGGGAAACGGTTTACATTGGCTGAAATCAACGCTGCAACGAAGAGTTTTGATGAGAGTTTGGTCATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAGGGAGAGGTTGATGATGGTGTGCCTGCTGCAATTAAGCGTGCCAATCCTCAGTCTGAACAAGGTCTGGCTGAATTCGAGACCGAAATAGAGATGCTCTCAAAACTAAGACACAGGCATCTAGTATCTTTGATTGGTTTCTGCGAAGAGAAAAGTGAAATGATTTTGGTTTATGAGTACATGGCAAATGGAACTCTAAGAAGTCATCTATTCGGAAGCAATCTCCCTCCACTGACATGGAAGCAGCGCCTCGAAGCTTGCATAGGCGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGAGGAATAATTCACCGAGATGTCAAAACAACCAATATATTGTTAGACGAGAATTTCGTAGCGAAAATGGCTGATTTCGGTCTGTCAAAAGACGGTCCTGCTTTCGAACACACTCATGTTAGCACCGCTGTGAAAGGAAGTTTCGGCTATCTCGATCCAGAGTATTTCAGAAGACAACAGTTAACCGAGAAATCAGATATTTACTCTTTCGGAGTTGTTCTGTTTGAAGCTGTTTGTGCTAGAGCCGTGATAAACCCTACCTTACCTAAAGATCAAATCAATCTTGCAGAATGGGCATTGAGATGGCAAAGAGAAAGATCGCTCGAAAAAATCATCGATCCACATCTTAAAGGAAACTATTGCCCCGAATCATTGTCTAAATTCGGGGAGATAGCTGAAAAATGTCTCGCCGACGATGGTAAAAGCCGTCCCACCATGGGAGAGGTGTTATGGCACTTGGAATATGTTTTACAGCTACATGAAGCTTGGCTCAACATGGACAACAACAACAACAATAGCACAGAAAATTCCTTCTCTAGAGTTGAAGTTGAGCAAGAGCATTCAAATCAAGATGAAGAAGCATGA 2499 0.427 MMGKVIGEGVLIVLILMIVSENVEAQPKSILINCGSNASVNVDGRRWMGDMVVNNNVTLNSPGVVASTDALSGSSIYEPLYRTARVFTASLNYTIRGVQGKYFVRFHLCPFEIVDHNVNESSFGVVVNGMKLLSEFNVAGKISEKNANLQNSERNSSLFFLVKEYILDVDDGLLVIEFVPSRNSFGFANAIEIVPVVGELFDGSVGKVGGGNLSLAGHGMETMYRLNVGGPEIQSNEDPDLRRIWEVDSSYMITENAGVGMKNSSNITYALVNDTSVAPLLVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYVVRLHFCELMYDKSNERVFRIYINNRTAADNLDVFVRAGGKNKAYHLDHYDSASMRMGMLWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVERYNSAGNSGSKSKSKVLWIGVGAGIASVAIIACIGVLVFCFCKRRRKESSDTKNNSPGWLPIFLYGGGAAVNSTVGVKGSNGNQKLYGSVASTGAGKRFTLAEINAATKSFDESLVIGVGGFGKVYKGEVDDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDIYSFGVVLFEAVCARAVINPTLPKDQINLAEWALRWQRERSLEKIIDPHLKGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNMDNNNNNSTENSFSRVEVEQEHSNQDEEA 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09660 832 Gene3D - 219 402 - -
Vifa1g09660 832 Gene3D - 29 196 - -
Vifa1g09660 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vifa1g09660 832 MobiDBLite consensus disorder prediction 806 832 - -
Vifa1g09660 832 FunFam Receptor-like protein kinase FERONIA 597 813 - -
Vifa1g09660 832 SMART serkin_6 521 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09660 832 Pfam Protein tyrosine and serine/threonine kinase 526 788 IPR001245 GO:0004672|GO:0006468
Vifa1g09660 832 FunFam receptor-like protein kinase FERONIA 486 596 - -
Vifa1g09660 832 FunFam Receptor-like protein kinase FERONIA 219 402 - -
Vifa1g09660 832 CDD STKc_IRAK 527 792 - -
Vifa1g09660 832 ProSiteProfiles Protein kinase domain profile. 521 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09660 832 PANTHER OS07G0166700 PROTEIN 507 798 IPR045272 GO:0004714|GO:0006468
Vifa1g09660 832 Gene3D Phosphorylase Kinase; domain 1 484 596 - -
Vifa1g09660 832 SUPERFAMILY Protein kinase-like (PK-like) 497 793 IPR011009 -
Vifa1g09660 832 Gene3D Transferase(Phosphotransferase) domain 1 597 820 - -
Vifa1g09660 832 Pfam Malectin-like domain 32 399 IPR024788 -
Vifa1g09660 832 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09660 Vifa-Chr1 1553831702 1553834200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09660 8 824 Receptor kinase-like Gene Family AT1G30570 65.207 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g09660 Malectin_like 3.2e-29 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09660 - - gmx:100791403 1317.37