Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09658 ATGAAGCTCTTTACTCTTTTTGTGTTATCTTTATCTTTCTTTACCATTATGGGGCAGCTTCCTTCACAGGACATTTTAGCATTGTTGGAGTTTAAGAAATGCATCAAGCATGACCCTACTGGTTATGTCCTGAATTCGTGGAATGAAGAATCGATTGACTTTGACGGTTGTCCGTCTTCATGGAATGGTGTTCTTTGTAACGGTGGTAATGTTGCTGGTGTTGTCCTTGATAACTTAGGTCTCTCTGCCGATACGGATTTGAGTGTTTTTTCTAATCTGTCGAAGCTTGTGAAACTTTCCATGGCCAATAATTCCATATCAGGAAAATTACCCAACAATGTTGCCGATTTCAAAAGCATTGAGTTTCTTGATATTTCCAATAACCTCTTTTTTTCGTCCTTACCGGTTGGAATCGGTAAATTTGATAGCTTGCAGAATCTGTCATTGGCTGGAAATAACTTTTCCGGTCCAATTCCGAATTCTATTTCTGAGATGTCTTCCATCAAATCATTAGACTTGAGCCGTAACGCCCTTTCCGGAGCACTTCCGCAATCATTGACTAAACTGGATAGTCTTGTATCTCTTAATGTGTCTCGTAATGGCTTCACTGGAAAAATTCCCAGAGGTTTTGAGCTTATTTCCAACCTTGATAAACTCGACTTGCATGGGAATATGCTTGACGGTCCTTTAGATCTCGAGTTTATGCTTTTATCAGGTGCTAGCTATGTTGATTTAAGTGATAACATGCTGCTGAGTTCCGATTCCGGGAAATTTCTTCCACAAATATCTGAAAGTATTAAGTATATGAATCTTAGCCATAACCAGCTTACTGGTTCATTGGTTGGTGGAGCCGAACAACCTGTTTTCCAAAACTTGAAGGTGTTGGATCTCAGCTATAACCAATTGAATGGTGAATTACCTGGATTCGATTTTGTTTACGATCTCCAAACCCTTAAGCTTAGCAACAATAAGTTTTCAGGATTTATTCCTAGTGGCTTACTTAAAGGAGATTCTTTGGTTTTAACTGAACTTGATTTGAGCGCCAACAATCTTTCAGGACCACTGAGTATAATTACATCAACGACACTTCACTTTCTGAATATCTCATCAAATGGTTTCACTGGCCAGCTGCCGCCGCTGACTGGAAGTTGTGCTGTACTCGATCTGTCAAATAACAAATTTGAAGGAAATTTAACAAGGATGTTTAAATGGGGGAACATAGAATATCTTGATCTCAGTCGGAATCGTTTGACAGGGAACATCCCCGAGGTAACTCCTCAGTTTTTGCGATTGAGTTATTTGAACTTATCTGGTAATGATCTCGGTGACTCCCTTCCAAAAGTATTAACACGGTATCCGAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAAAAGGCTTTCTTCTAGCAGAATTTTTCACAATGCCAACGTTACAAGAGCTTCATCTCGAAAATAATTTGATTGATGGTGGCATCAATTTATCGTCTACTCTTGACCAATCTCATCTTCAAGTTCTTGATCTTTCTCACAACCAGCTTAATAGCTTTTTTCCCGATAAATTTGGATCATTAACTAGCCTGAGAGTGCTCAATATCGCTGGAAATAAATTTGCTGGTTCTCTTCCAACTACTATTTCTGACATGAGTTCTCTAGACTCCTTGGATATATCGGATAATCGTTTTACCGGTCCACTTCCAAATAATATGCCAATTGGACTCAAATACTTCAATGCTTCAGAAAATGATCTATCTGGAGCTGTCCCAGAAATTCTTAGGAAGTTCCCTACTTCTTCTTTCTTTCCTGGAAATGACAAGTTACATTTTCCAAATGGTCCTCCTGGATCAACCGTTTCACCGGCCGATAGTTCCAAGGGGAGGAAGTCTATGACCACGGTTGTTAAGGTAATAATTATAGTCTCATGTGTGGTTGCTCTCTTCATATTAATCTTACTGGCTGTCTTCATACACTACATACGTATGTCAAGATCATCTACGCAAGAATATGATACAAGTAAGGATATCCACGGGCGCCCTCAACCGGTAATATCTGGACCTATTCGTCCGACAGAGAGAGGTGGCCCTTTGGTTGTATCGGCTGAAGATCTTGTATCCTCGCGTAAAGGTTCACCATCAGAAATAATTAGCCCCGATGAAAAAACTGCAGCCGTAGCTGGATTCTCCCCGTCAAAACACAGCCACTTTTCATGGTCACCAGGATCTGGCGATTCATTGACTGCCGAAAATCTTACAAGGCTAGATACGAGGTCTCCGGATAGGTTGATTGGTGAGCTGCATTTTCTTGATGATACAATATCGCTGTCACCTGAGGAGCTATCGAGGGCACCGGCTGAAGTTCTGGGAAGAAGTAGTCACGGTACTTCTTACAAAGCAACTTTGGATAATGGCGTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCAAAACAAAGAAAAGAATTTGTTAAAGAGATAAGAAAGTTTGCAAACATCAGGCATCCAAATGTCGTCGGTTTGAGAGGTTATTATTGGGGTCCTACGCAGCACGAGAAGCTCATTCTTTCAGATTACATTTCACCAGGAAGTCTTTCAAGTTTTCTTTATGATCGACCAGGGAGAAACGGTCCACCGTTAACATGGGCTCAGAGGCTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTCGACCGAGCTGTTCCTCACGGGAACCTTAAAGCTACAAACGTGCTGTTAGACACACCTGATATGAACGCACGTGTTGCTGATTATTGTCTTCACCGACTCATGACTCAAGCTGGTACTATTGAACAGATTCTTGATGCTGGTGTCTTGGGTTATCGTGCACCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCGTCGTTCAAGTCAGATGTCTATGCTTTCGGCGTGATACTTTTGGAGCTTTTAACTGGAAGGTGTGCTGGTGATGTGGTATCCGGTGAGGAGGGAGGTGTTGATCTTACAGATTGGCTAAGATTGCGAGTAGCAGAAGGTCGAGGCTCGGAGTGTTTTGATTCTACTTTGATGTCAGAAATGGGAAATCCAGTGGTAGAAAAGGGAATGAAGGAGGTCTTAGGAATAGCGATCCGATGTATTCGATCGGTTTATGAAAGGCCTGGTATCAAGACTATATATGAAGATATTTCTTCTATATAG 3192 0.4145 MKLFTLFVLSLSFFTIMGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLSKLVKLSMANNSISGKLPNNVADFKSIEFLDISNNLFFSSLPVGIGKFDSLQNLSLAGNNFSGPIPNSISEMSSIKSLDLSRNALSGALPQSLTKLDSLVSLNVSRNGFTGKIPRGFELISNLDKLDLHGNMLDGPLDLEFMLLSGASYVDLSDNMLLSSDSGKFLPQISESIKYMNLSHNQLTGSLVGGAEQPVFQNLKVLDLSYNQLNGELPGFDFVYDLQTLKLSNNKFSGFIPSGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHFLNISSNGFTGQLPPLTGSCAVLDLSNNKFEGNLTRMFKWGNIEYLDLSRNRLTGNIPEVTPQFLRLSYLNLSGNDLGDSLPKVLTRYPKLRVLDISSNQLKGFLLAEFFTMPTLQELHLENNLIDGGINLSSTLDQSHLQVLDLSHNQLNSFFPDKFGSLTSLRVLNIAGNKFAGSLPTTISDMSSLDSLDISDNRFTGPLPNNMPIGLKYFNASENDLSGAVPEILRKFPTSSFFPGNDKLHFPNGPPGSTVSPADSSKGRKSMTTVVKVIIIVSCVVALFILILLAVFIHYIRMSRSSTQEYDTSKDIHGRPQPVISGPIRPTERGGPLVVSAEDLVSSRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPGSGDSLTAENLTRLDTRSPDRLIGELHFLDDTISLSPEELSRAPAEVLGRSSHGTSYKATLDNGVLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLSSFLYDRPGRNGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTPDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVVSGEEGGVDLTDWLRLRVAEGRGSECFDSTLMSEMGNPVVEKGMKEVLGIAIRCIRSVYERPGIKTIYEDISSI 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09658 1063 Gene3D Ribonuclease Inhibitor 287 619 IPR032675 -
Vifa1g09658 1063 Gene3D Phosphorylase Kinase; domain 1 773 858 - -
Vifa1g09658 1063 ProSiteProfiles Leucine-rich repeat profile. 291 313 IPR001611 GO:0005515
Vifa1g09658 1063 MobiDBLite consensus disorder prediction 670 691 - -
Vifa1g09658 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 356 613 - -
Vifa1g09658 1063 SUPERFAMILY RNI-like 290 594 - -
Vifa1g09658 1063 FunFam Pollen receptor-like kinase 1 859 1063 - -
Vifa1g09658 1063 SUPERFAMILY L domain-like 43 378 - -
Vifa1g09658 1063 FunFam Leucine-rich repeat receptor-like protein kinase 766 858 - -
Vifa1g09658 1063 ProSiteProfiles Leucine-rich repeat profile. 503 524 IPR001611 GO:0005515
Vifa1g09658 1063 ProSiteProfiles Protein kinase domain profile. 781 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09658 1063 MobiDBLite consensus disorder prediction 606 626 - -
Vifa1g09658 1063 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 20 263 - -
Vifa1g09658 1063 PANTHER OS07G0626500 PROTEIN 7 1063 - -
Vifa1g09658 1063 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Vifa1g09658 1063 Pfam Leucine rich repeat 502 562 IPR001611 GO:0005515
Vifa1g09658 1063 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Vifa1g09658 1063 SMART LRR_typ_2 189 212 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 502 524 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 289 311 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 93 117 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 312 336 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 525 549 IPR003591 -
Vifa1g09658 1063 SMART LRR_typ_2 165 188 IPR003591 -
Vifa1g09658 1063 Pfam Leucine Rich repeat 290 305 IPR001611 GO:0005515
Vifa1g09658 1063 Gene3D Ribonuclease Inhibitor 181 286 IPR032675 -
Vifa1g09658 1063 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Vifa1g09658 1063 SUPERFAMILY Protein kinase-like (PK-like) 784 1055 IPR011009 -
Vifa1g09658 1063 Pfam Protein tyrosine and serine/threonine kinase 785 983 IPR001245 GO:0004672|GO:0006468
Vifa1g09658 1063 Gene3D Transferase(Phosphotransferase) domain 1 860 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09658 Vifa-Chr1 1553237975 1553241430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09658 1 1051 Receptor kinase-like Gene Family AT1G55610 27.833 1.34e-80 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g09658 PK_Tyr_Ser-Thr 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09658 - - gmx:100793639 1737.62