Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09656 ATGGCAAGTATTTGTGGCATACGTAAATATTGGATGCTACTATCTAATCGGCACTTGGAATTTTATAAAAGTGCACTTCCTCAACCTTTGACTTCGATTCAGCGTCTTTATATTAGTCGGCTAGTTGAGAAATATGGAGCTGATTTTCAGAGAATGATGATGGATATAAAGCTAAATCCTATGCAGCATTCTGTTGCAACTTTAGAGAAATTGTATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCTTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTACACATCTCTGTTTCCTAA 1020 0.402 MASICGIRKYWMLLSNRHLEFYKSALPQPLTSIQRLYISRLVEKYGADFQRMMMDIKLNPMQHSVATLEKLYFGCFDTLDVARAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGICCCRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDLVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVHISVS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09656 339 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 181 305 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa1g09656 339 Gene3D Bira Bifunctional Protein; Domain 2 165 308 IPR045864 -
Vifa1g09656 339 PANTHER THREONINE-TRNA LIGASE 197 335 - -
Vifa1g09656 339 Pfam Ribosome biogenesis protein Nop16 25 71 IPR019002 -
Vifa1g09656 339 Gene3D - 309 338 IPR036621 -
Vifa1g09656 339 SUPERFAMILY Class II aaRS ABD-related 303 334 - -
Vifa1g09656 339 Gene3D Tetratricopeptide repeat domain 68 151 IPR011990 GO:0005515
Vifa1g09656 339 PRINTS Threonyl-tRNA synthetase signature 283 296 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g09656 339 PRINTS Threonyl-tRNA synthetase signature 310 322 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g09656 339 PRINTS Threonyl-tRNA synthetase signature 239 267 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g09656 339 SUPERFAMILY Class II aaRS and biotin synthetases 177 302 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09656 Vifa-Chr1 1553047514 1553050203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09656 130 199 RAD5 or RAD16-like Gene Family AT1G50410 68.571 1.77e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09656 K01868 - gmx:100812652 266.159