Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09644 ATGAATTCATCACTAGGAAGTACGGGCGCGGCAGGATCTGGTGACGATGATATTGATAACTTACAAAGTGATAGAAGAGCTTCTTACAAACGTCTCACAGCAACTCAATCAACCATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGATGCTCAAAGACGTCAATTGGCTGAAGAGGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAATAAGAGAACTCTCATTAAGAATCAACACGAGAGGGAAAATAACACTACTCTTCGTCTGGAGAATGAAAGGATTCATAATGAGAACCTCTTAATCAAAGAGGCGCTGAAGGCCACAATTTGTTCAACTTGTGGAGGTCCTCCATTTCCTCAAGAAGAGCATGAACATTTCATGCACAGCATGGAACGAGAAAATGCTCAGCTCAAGCAAGAGCGTGACAAAGTGTCAAACCTTATTGCAAACTACATGGAGAAAAAGATATCTCTCCCTGAGTTTGAGCAAGCTCTTGCTACTGTAAAATCATTCTCAAGAGATAGAGACATTGATTTTTCACAAACCAAACCAGTTTATGAAACACTAAGGCATGCTCATCTTCATGTTCATGGTAATCTAACCATGAGAGAAGCTATGTTAATGAACATCTCTGAGCAAAACCCTGATGAACAAAAGAGAATGATGTCTCGGATTGCAACAATTGCAATGGAAGAGTTGGCTAGGCTTCTTAGAGTTAATGAGCCTTTTTGGGTTAACACTCGAGATGGGAAATTCACTCTTGATCGTGAAAGTTACGAGCAAGTTTTTCCCAAGGACAATCACTTTCAAGGTGCAAACGTGTGTGAAGAATCTTCTAAATTTTCTGGAGTTGTCAAACTTAGTGCCTTGCAACTAGTTGACATGTTTCTAGACCCGCTCAAATGGAAAAACTTGTTTCCAACAATTGTTACCAAAGCTGAAACTGTCAAATTGTTCGAAACTGGTTCAACAGAAAATCGAGATGGAGCTTTGCTTTTGATGCATGAACAACTGCATATTCTGTCACCTCTAGTGCGTCCTCGCGAATTTAGCATCATTCGCTACTGCAAACAAGTTGATGCTGGCGTATGGATGGTAACTGATGTGTCAATTGATGCATCTCGCCCGAACACTACGCCTCTCTGTCAATCCTGGAAGTTTCCATCCGGATGCATAATCCGCGAATTGCCTCATGATGCCTGCCTGGTTACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACATCCTGTGTATAGACATCTTATCAGTAACTTTAATCTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGCGAAAGATCTTTCAGCTTTTTTGTTGAAACTATAGCTGATCAAGAAACTTCAGGAGTGATCACATCAACTGATGGGAGGAAAAGTGTGATGAAGCTTGCTCATAGAATGGTCAAAATGTTCTGTGAAAGTTTAACAATGTCAGGCCAATTGGAATTTCAACATGTCACTCTTGATAGCATTGGTGGAGTTAGAGTTTCTATTCGCAAAACCAACAATTTCGGCCAACCAAAAGGCACGGTTGCTGTCGCTGCTACCACCCTTTGGCTCCCTCTCCCTGCTAAAAGAATCTTCGAGTTCCTCAGAGATCCTACAAAACGATCTAAGTGGGATGTCCTTTCTTCTGGAAAGCCAATGACTGAGATTGCACACATCTCCAATGGACTCTATCCTGGCAACTCCATTTCAATTATTCAGCCGTCTGTCTTTCGCGAAGACCAACCGGTGATCATCCAAGAAAGTTTCACATCTTGTGTGGGATCGTACATTATATTCGCTCCAACCGATAAATCATCTATGAATATAGCTATTCGAGGTGATGAGTCAAAAGGCCTAGAAATTCTTCCAACGGGATTCGTTGTTTGCTCAAAAGCTAAGCCGAATGCAGCTTTCGATACATTTGGCAATACCGGAAGTGGTGCTGGTGCTGGTGCAGGTGCTGGATCTTTGTTAACTGTGGCTTATCAAATTCTTATTTCTACTTCAACTGGAATTGGCACACAGCAACATATGGAATCTATGGCTTCTGTCAACACTCTTCTGTCCGGTACTATTCGAAAAATGAAGGATGCTCTCATGTGA 2145 0.4163 MNSSLGSTGAAGSGDDDIDNLQSDRRASYKRLTATQSTILENFMKECHHPDDAQRRQLAEEVGLEPKQIKFWFQNKRTLIKNQHERENNTTLRLENERIHNENLLIKEALKATICSTCGGPPFPQEEHEHFMHSMERENAQLKQERDKVSNLIANYMEKKISLPEFEQALATVKSFSRDRDIDFSQTKPVYETLRHAHLHVHGNLTMREAMLMNISEQNPDEQKRMMSRIATIAMEELARLLRVNEPFWVNTRDGKFTLDRESYEQVFPKDNHFQGANVCEESSKFSGVVKLSALQLVDMFLDPLKWKNLFPTIVTKAETVKLFETGSTENRDGALLLMHEQLHILSPLVRPREFSIIRYCKQVDAGVWMVTDVSIDASRPNTTPLCQSWKFPSGCIIRELPHDACLVTWVEHVEVEDKIHTHPVYRHLISNFNLYGAESWIKELQRMCERSFSFFVETIADQETSGVITSTDGRKSVMKLAHRMVKMFCESLTMSGQLEFQHVTLDSIGGVRVSIRKTNNFGQPKGTVAVAATTLWLPLPAKRIFEFLRDPTKRSKWDVLSSGKPMTEIAHISNGLYPGNSISIIQPSVFREDQPVIIQESFTSCVGSYIIFAPTDKSSMNIAIRGDESKGLEILPTGFVVCSKAKPNAAFDTFGNTGSGAGAGAGAGSLLTVAYQILISTSTGIGTQQHMESMASVNTLLSGTIRKMKDALM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09644 714 SUPERFAMILY Bet v1-like 220 451 - -
Vifa1g09644 714 Pfam START domain 233 451 IPR002913 GO:0008289
Vifa1g09644 714 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g09644 714 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Vifa1g09644 714 Pfam Homeodomain 28 81 IPR001356 GO:0003677
Vifa1g09644 714 SMART START_1 229 451 IPR002913 GO:0008289
Vifa1g09644 714 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Vifa1g09644 714 Gene3D - 256 450 IPR023393 -
Vifa1g09644 714 Gene3D - 14 99 - -
Vifa1g09644 714 CDD homeodomain 31 84 IPR001356 GO:0003677
Vifa1g09644 714 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Vifa1g09644 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 713 IPR042160 -
Vifa1g09644 714 SUPERFAMILY Bet v1-like 474 578 - -
Vifa1g09644 714 CDD START_ArGLABRA2_like 224 450 - -
Vifa1g09644 714 Coils Coil 125 159 - -
Vifa1g09644 714 SUPERFAMILY Homeodomain-like 10 83 IPR009057 -
Vifa1g09644 714 SMART HOX_1 25 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09644 Vifa-Chr1 1550538877 1550543017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09644 22 713 Homeobox Transcription Factor Family AT1G73360 38.842 1.68e-166 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g09644 START 1.2e-28 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09644 K09338 - gmx:100795075 723.391