Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09625 ATGATTCAACCACTCACAATATTTCATATCATTGTTTTAATAATATCTCCTTCACTGGCCTCGGCACAAGAAGATGGAATCACAGCACAATATGGTTGTAATTCAACATGTGGAACAGTTTCAGTCCCTTTCCCATTCGGAATGAATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTTGACAACAATACTTCTTCTGATGTTCCTAAACCTTACTTGAAGTCGTTAAATCTTCAGGCTGAAAACACGTTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCTAATGGGACAACCGTTGGTGGTTGTGTATCAATTTGTGACGACGACAACAACAACAGTAACAATTTCAATTTTAATAGTGACGGTTGTAATGGAAGATATTGTTGTGCAACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACACTAAGAGGTTTAAGGGAACAGAGTAGTGATGGTTGTGGTTATGCTTTGATTACAAATGATAACAGGATACTTTTTGACAGTTCGGATAATATGAACACGGATGATAATGAGACATTGAATGAATTGAAGAACATGGAATATGCTTCTGCAATGCTTGAGTGGGAGATTTTGAATGATATGTTAATTAATTCCACATTTCAACTACCTCCAAATTGTTACAACTCCAAGGTTACTTCTTTAAGTAACAGAACCACCGGTCGGCAATGTCAATGCTCGTCCGAGGGTTACCCTGACTATCTCTACCTTACTAGAGGAATCTATGGAAATCCATACCTTGGAGGCTGCACAGTTCCAAAGCAACACTTTTATAGGAATAATCGATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTTCTCATTGGTTTATGGTTTTTGTACAAAGCTATGAAACGAAGAATGATTAAGAAACGCAGAGAAAAATTCTTCAAAAGAAACGGTGGTCTGCTGTTACAAAAAAGGATGTCTGCAGGAGAAGTAAATGTTGATAGAACTATTCTCTTCACCTTGAAGGATTTAAAGAAAGCCACTGATAATTTCAATAAGGATAGAATTCTTGGAAAGGGAGGCCAAGGTACAGTTTACAAAGGCATGCTGGTGGATGGTAAAATTGTTGCTGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTGATTCTTTCACAAATCAACAATAGAAATGTTGTCAGACTATTGGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTGCATGACCAAAATGAGGACATACCAATGACATGGGACATGCGTTTGAGAATTGCCTGTGAAGTTGCTGGTGCTATATTTTATTTGCACTCAGTTGCATCTCAGCCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAGCATCAAGAATAATTTCAATTGAAGCTACTCATCTTACCACAATGGTCCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTTACACTAGTCAATTCACAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCTTCTATAACAAGATCTGAGGATTCAAAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATGTTGTTTGACATTATTGACAAAAGGGTCATAGAAGGAGGAGAGAAAGAACGTATCATTTCAGTTGCAAATCTTGCATATAGATGCTTAGAAATAAATGGAAGAAAACGACCAACCATGAAAGAAGTCACATTAGAATTGGAAGGGATTAGGGGATTCAATAAGAAGCTTAATGCACAACAAAATAACAAGGAAATTGAGTTTTCTGGAATCGAACAGTACCAACCTTGGGATGGGTTTTCTGCATCAAATTCATTATCAATTATCAGCAGCCAAACACACTCCACAGACTAG 2031 0.3668 MIQPLTIFHIIVLIISPSLASAQEDGITAQYGCNSTCGTVSVPFPFGMNEPHCYAHKWFEIECKFDNNTSSDVPKPYLKSLNLQAENTFLAVGCNNLAFLQSNGTTVGGCVSICDDDNNNSNNFNFNSDGCNGRYCCATSLPSHLSEFNATLRGLREQSSDGCGYALITNDNRILFDSSDNMNTDDNETLNELKNMEYASAMLEWEILNDMLINSTFQLPPNCYNSKVTSLSNRTTGRQCQCSSEGYPDYLYLTRGIYGNPYLGGCTVPKQHFYRNNRWKKWVIVGISSSLGSIGFLIGLWFLYKAMKRRMIKKRREKFFKRNGGLLLQKRMSAGEVNVDRTILFTLKDLKKATDNFNKDRILGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIACEVAGAIFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSITRSEDSKNLASYFVQCIEENMLFDIIDKRVIEGGEKERIISVANLAYRCLEINGRKRPTMKEVTLELEGIRGFNKKLNAQQNNKEIEFSGIEQYQPWDGFSASNSLSIISSQTHSTD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09625 676 FunFam Wall-associated receptor kinase 2 327 430 - -
Vifa1g09625 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vifa1g09625 676 SMART serkin_6 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09625 676 SUPERFAMILY Protein kinase-like (PK-like) 342 624 IPR011009 -
Vifa1g09625 676 Gene3D Phosphorylase Kinase; domain 1 325 430 - -
Vifa1g09625 676 Gene3D Transferase(Phosphotransferase) domain 1 431 653 - -
Vifa1g09625 676 Pfam Wall-associated receptor kinase galacturonan-binding 33 74 IPR025287 GO:0030247
Vifa1g09625 676 CDD STKc_IRAK 363 629 - -
Vifa1g09625 676 FunFam Wall-associated receptor kinase 2 431 648 - -
Vifa1g09625 676 Pfam Protein kinase domain 357 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09625 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 637 IPR045274 GO:0007166
Vifa1g09625 676 ProSiteProfiles Protein kinase domain profile. 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09625 Vifa-Chr1 1546028695 1546036213 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09625 33 630 Receptor kinase-like Gene Family AT1G69730 41.494 1.69e-170 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g09625 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09625 - - mtr:11415953 942.184