Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09622 ATGATTCAACCACTCACAATATTTCATATCATTGTTTTAATAATATCTCCTTCACTGGCCTCGGCACAAGAAGATGGAATAGTTTCAGTCCCTTTCCCATTCGGAATGAATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTTGACAACAATACTTCTTCTGATGTTCCTAAACCTTACTTGAAGTCGTTAAATCTTCAAGTAATCTATTTTTACTCGTACATGAGCATGGTTGAGATTATGAACCCAATTTACCGTTCAAATTGTCAAAAAAACAAAATTAGCATCAACAATAGAAAAACCGTTAATCTTAGAGACAGTCCTTACATATTTTCACAGGCTGAAAACACGTTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCTAATGGGACAACCGTTGGTGGTTGTGTATCAATTTGTGACGACGACAACAACAAGAACAACAACAAGTTTAACGCAACACTAAGAGGTTTAAGGGAACAGAGTAGTGATGGTTGTGGTTATGCTTTGATTACAAATGGTAACAGGATACTTTTTGACAGTTCGGATAATATGAACACGGATGATAATGAGACATTGAATGAATTGAAGAACATGGAATATGCTTCTGCAATGCTTGAGTGGGAGATTTTGAATGATATGTTAATTAATTCCACATTTCAACTACCTCCAAATTGTTACAACTCCAAGGTTACTTCTTTAAGTAACAGAACCACCGGTCAGCAATGTCGATGCTCGTCCGGGTTTTACTCTGACTATCTCTACGAAATCTATGGAAATCCATACCTTGGAGGCTGCCCAGTTCTAGAGCAAGACTTTTATAGGAATAATCGATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTTCTCATTGGTTTATGGTTTTTGTACAAAGCTATGAAACGAAGAATGATTAAGAAACGCAGAGAAAAATTCTTCAAAAGAAACGGTGGTCTGCTGTTACAAAAAAGGATGTCTGCAGGAGAAGTAAATGTTGATAGAACTATTCTCTTCACCTTGAAGGATTTAAAGAAAGCCACTGATAATTTCAATAAGGATAGAATTCTTGGAAAGGGAGGCCAAGGTACAGTTTACAAAGGCATGCTGGTGGATGGTAAAATTGTTGCTGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTGATTCTTTCACAAATCAACAATAGAAATGTTGTCAGACTATTGGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTGCATGACCAAAATGAGGACATACCAATGACATGGGACATGCGTTTGAGAATTGCCTCTGAAGTTGCTGGTGCTATATTTTATTTGCACTCAGTTGCATCTCAGCCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAGCATCAAGAATAATTTCAATTGAAGCTACTCATCTTACCACAATGGTCCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTTACACTAGTCAATTCACAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCTTCTGTAACAAGATCTGAGGATTCAAAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATATTGTTTGACATTATTGACAAAAGGGTCATAGAAGGAGGAGAGAAAGAACATATCATTTCAGTTGCAAATCTTGCATATAGATGCTTAGAAATAAATGGAAGAAAACGACCAACCATGAAAGAAGTCACATTAGAATTGGAAGGGATTAGGGGATTCAATAAGAAGCTTAATGCACAACAAAATAACGAGGAAATTGAGTTTTCTGGAATCGAACAGTACCAACCTTGGGATGGGTTTTCTGCATCAAATTCATTATCAATTATCAGCAGCCAAACACACTCCACAGACTAG 2055 0.3625 MIQPLTIFHIIVLIISPSLASAQEDGIVSVPFPFGMNEPHCYAHKWFEIECKFDNNTSSDVPKPYLKSLNLQVIYFYSYMSMVEIMNPIYRSNCQKNKISINNRKTVNLRDSPYIFSQAENTFLAVGCNNLAFLQSNGTTVGGCVSICDDDNNKNNNKFNATLRGLREQSSDGCGYALITNGNRILFDSSDNMNTDDNETLNELKNMEYASAMLEWEILNDMLINSTFQLPPNCYNSKVTSLSNRTTGQQCRCSSGFYSDYLYEIYGNPYLGGCPVLEQDFYRNNRWKKWVIVGISSSLGSIGFLIGLWFLYKAMKRRMIKKRREKFFKRNGGLLLQKRMSAGEVNVDRTILFTLKDLKKATDNFNKDRILGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIASEVAGAIFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSVTRSEDSKNLASYFVQCIEENILFDIIDKRVIEGGEKEHIISVANLAYRCLEINGRKRPTMKEVTLELEGIRGFNKKLNAQQNNEEIEFSGIEQYQPWDGFSASNSLSIISSQTHSTD 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09622 684 FunFam Wall-associated receptor kinase 2 335 438 - -
Vifa1g09622 684 SMART serkin_6 365 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09622 684 Gene3D Phosphorylase Kinase; domain 1 333 438 - -
Vifa1g09622 684 FunFam Wall-associated receptor kinase 2 439 656 - -
Vifa1g09622 684 Gene3D Transferase(Phosphotransferase) domain 1 439 661 - -
Vifa1g09622 684 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 648 IPR045274 GO:0007166
Vifa1g09622 684 SUPERFAMILY Protein kinase-like (PK-like) 350 632 IPR011009 -
Vifa1g09622 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vifa1g09622 684 ProSiteProfiles Protein kinase domain profile. 365 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09622 684 CDD STKc_IRAK 371 637 - -
Vifa1g09622 684 Pfam Protein kinase domain 365 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09622 Vifa-Chr1 1544686552 1544689544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09622 26 638 Receptor kinase-like Gene Family AT1G69730 42.757 4.07e-172 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g09622 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09622 - - mtr:11415953 914.45